Petromyzon marinus (sea lamprey): 116948768
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Entry
116948768 CDS
T09614
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116948768 (SHOC1)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116948768 (SHOC1)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
116948768
NCBI-ProteinID:
XP_032821709
UniProt:
A0AAJ7TPL0
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Position
35:complement(57027..102208)
Genome browser
AA seq
788 aa
AA seq
DB search
MSKEIKSSKLRRFWESEMQFRDIHYLFLAVPNDFSSNAEMNPIALALKQLKPSHAQVCGI
KVINVEYLQQFLIHKAVSLHTALVHGTSRFGVLEDNRAPHVEVEVHRSYTTENLEAIKHR
AEMINGQYLDQSMKQAMDCNNDHQECLVSNFCKAESLQICETKVVLAGQFSNQSSTSWSK
SNNKISTQIKTQRVPLQENVKELPMQAPLFSDTKTNSLHEYLILQYRNESIKTPSKPCSA
VIARSVNLPSFKNVKVNYEENKPCDLSIVTNPEAAESAVLKPTHCKKEKSTVVDVLLSDA
MCNCIRILELSARTSMEMLRRNINSFMSTGSFVQLTPDMMQYLVKIIERFLHDEKESDAE
NYREMHMHAVILHALVRAADLIVNQDLSVAIAFLSEKKDADVELQQIWRQLTTVQFAFKE
NHEAHSKHEKLKSLISDWLTRKKRKRNDIDPKIMIIVNRHAKMLYSAIAQSLNGIKGFKV
KYISPKDESFGYNEILKKSKAKCVIVGFSACSLQTNHVSEADRHQGFFEVAGIANLECLH
EEGATDYIISHLAALSLQFQKCWLILYLSSSDYNMTYSHSAEVIHGLSFLKATSALYSLK
NDDYEIKILQTGSIQETVEAIRAIGDVTLFSSKGWDLDHCIIRPFLKPLVSKEEQFLLGF
PCINAFVAQLMLQKLDSLQQILSLSLPTLCNLLPQVPTKVLKLFNEICMKYQPVKRMEQD
DDFMHLNSPPFETSSFHHTHQEEDTFLFGPVLMSDSCLDIKDDAQKLKKLFYVRVPGRKD
GQTRLSFI
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagagataaaaagttcaaagttgagaagattttgggaatctgaaatgcaattt
cgtgatatccactatttatttcttgctgttcccaacgatttctccagcaacgctgaaatg
aatccaatagctcttgctcttaaacagcttaagccgtctcatgcacaagtttgtggaatt
aaagtaataaatgttgaatatttgcagcagtttttgatacacaaagctgtgtcattgcac
actgcactggtccatggcacaagtagatttggagtcttggaagataatcgagctcctcac
gttgaggttgaagttcatagatcttacacgacagaaaatcttgaagccataaaacataga
gctgaaatgatcaatggacaatatttagatcaatccatgaagcaagctatggattgtaat
aatgaccatcaagaatgccttgtgtcaaacttttgtaaagctgagagtttgcaaatatgt
gaaacaaaagttgtgctggctggtcaattttccaatcagagttcaacaagttggtctaaa
tcaaacaacaaaatatctactcaaattaaaactcagagagtccctttgcaagaaaatgta
aaagaattaccaatgcaagcgccactctttagtgatacaaaaacgaactctctgcacgag
tatttaatattacaatacagaaatgaatccataaaaacgccatctaagccatgttcagca
gtaattgcaagatctgtaaatttaccatcttttaaaaacgtgaaagtgaattacgaagaa
aacaagccatgtgacctctccattgttactaatccagaggcggcagaaagtgctgtactt
aaacctacccactgtaagaaagaaaaatctacagttgttgatgttctgctttcagatgcc
atgtgtaattgtataagaatcttagagctgtctgctagaacaagcatggaaatgttaaga
cgtaatatcaactcatttatgagcactgggagtttcgtgcagcttacaccggacatgatg
caatatttggtgaagataatagaaaggtttctccacgatgagaaagaaagtgatgcagaa
aactatagagaaatgcatatgcatgcagtgatcctccatgcgttggtaagagcagcggat
ttaatagtcaaccaggatctttcagtcgcaatagcatttctttctgagaaaaaagatgct
gatgtggagctgcaacaaatatggagacaattgactaccgtacaatttgcatttaaagaa
aaccatgaagctcactcaaagcatgaaaaattaaaaagtctgatatcagattggctgaca
aggaagaaacggaaaaggaatgacattgacccaaagatcatgattattgtgaatcggcat
gctaaaatgctatactcagctattgcacaaagcctgaatgggattaaaggttttaaagta
aagtacatctctccaaaagatgagtcatttggatataacgaaattctgaaaaaaagcaag
gccaagtgtgtcattgttggcttctctgcatgttccttacaaactaatcatgtctcagaa
gctgacaggcatcaaggattcttcgaggttgctggaatcgcgaatttagaatgtttacac
gaagaaggtgctacagactacataatttcccacctggcagcattgtctctgcaattccaa
aaatgctggctcattctttatttatcttcgtccgattataacatgacgtattcacattct
gcagaagttattcatggtctatcttttcttaaagcgacttcagcactatacagtctgaag
aatgacgactatgaaataaagattcttcaaactggaagcattcaagaaacagtagaagca
ataagggcgattggggatgtgacactcttcagcagcaagggttgggaccttgaccactgt
attattaggccttttctgaagcccctggtttcaaaggaggagcaatttttgctcggattt
ccttgtattaatgcattcgtagcacaactgatgttacaaaaattagattcactccagcaa
atcctgtcattgtcactgccaacattatgcaaccttttaccccaagtgccaacaaaggtc
ttgaagcttttcaatgaaatatgtatgaagtaccagccagtcaaaagaatggaacaagat
gatgactttatgcatttaaactcacctccatttgaaacctcaagttttcaccacactcat
caagaggaagacacatttttatttgggcctgttttaatgtcagattcatgcttggacata
aaggatgatgcacaaaaactgaaaaaactattttatgtacgagtgcctggccgcaaagat
ggacaaacccgactttcgtttatctaa
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