Petromyzon marinus (sea lamprey): 116948772
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Entry
116948772 CDS
T09614
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116948772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116948772
03041 Spliceosome [BR:
pmrn03041
]
116948772
03009 Ribosome biogenesis [BR:
pmrn03009
]
116948772
03016 Transfer RNA biogenesis [BR:
pmrn03016
]
116948772
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116948772
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116948772
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116948772
Complex C
U4/U6.U5 tri-SnRNP related factors
116948772
Ribosome biogenesis [BR:
pmrn03009
]
Eukaryotic type
Pre-60S particles
Helicases
116948772
Transfer RNA biogenesis [BR:
pmrn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116948772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
116948772
NCBI-ProteinID:
XP_032821731
UniProt:
A0AAJ7TRM9
LinkDB
All DBs
Position
35:124576..149901
Genome browser
AA seq
1019 aa
AA seq
DB search
MGDAFGGDLFSVFDEEADEKPLGVPSPRQKKTPTKRPYGCEETGSAASERGAGADGIDEL
ISRKRLKLERNITFEQNLTQLMPRVKTVRVETLEGCTHEVAIAQESAYETLKPRVGLPAK
EYPFLLDPFQREAILCIDNSQSVLVAAHTSAGKTVCAEYAIAQALRGKQRVIFTSPIKAL
SNQKYRELHEEFHDVGLLTGDITINPSASCLVMTTEILRSMLYRGSEIMREVAWVIFDEI
HYMRNPERGVVWEETIILLPDNVHYVFLSATIPNGTQFAEWICHLHKQPCHVVSTDYRPT
PLQHFIFPAGGDGLLLVVDEFLDFKEDNFLQAMSLLREGGDPSRKRKGGNKGESNVFKII
KLIMERNLQPVIIFSFSKRECETYAVQLSQLDFNTEEEKCLVEEVFNNAMSCLSDEDQKL
PQVQRVLPILKRGIGIHHGGLLPVLKETIEILFSEGLIKALFATETFAMGINMPARTVLF
TSARKFDGRDHRWISSGEYIQMSGRAGRRGMDERGTVILMVDEKMSPTVGHQLLQGSPDP
LNSAFHLTYNMVLNLLRVEEINPEYMLEKSFFQFQQYKAVPDLLAKLQALQGRYAALSVP
DAASATSYYHIEQQLQRLHVEARAITLRPQHCLHVLQPGRLVQVTHGKEHFGWGVVVNFQ
RKPTSQEEFTLVVEALLLCSEESVRNAATEAPRPPQPKERGELQVVPVALELVEAISTVR
LYMPPDLRTPEARHHVLKTLQEVKARFPDGVPLMDPVHDLGIKDPELEAVLHKTRAFAQR
RLAHPLHTSPQRDAIRDICVSKAQVAEEVRAVRKEVRRAHMMLQMDELKRRKRVLRRLGF
CTQADVIQVKGRVACEITAGHELLLTELVFEGLFNELSPEQAAALLSCFVFQEKASETPK
LATDLAEPLRKMKECARRIGHVSVEAKLLGREDALLDDIRPQLMDVVYSWALGESFFTIT
TMTDAFEGSIIRCFRRLEELLKEMGKAAHVIGNSELEEKFNKAVTAIKRDIVFAGSLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgggggacgcgtttggcggagacttgttcagcgtcttcgacgaggaggcggacgagaag
ccgctgggagttccctcgcccaggcaaaagaagactccaaccaaacgcccatatggatgc
gaggagactgggtctgcagcctcagagaggggagccggagccgatgggatcgacgagctc
atcagcagaaagcgtctcaagctggagcgcaatattacttttgaacagaacctcacccag
ctcatgcccagagtgaagaccgtgagggtagagacactggagggctgcacgcacgaggtg
gccatcgcacaggagtctgcttacgagaccctcaagcccagagttggtttgccggcaaag
gagtatccgttcctgctggacccgttccagcgggaggcaatcctgtgcattgacaacagc
cagtcagtgctggtcgccgcacacacgtcggctggaaaaaccgtctgtgccgagtacgcg
atagcgcaagctctgcgtggaaagcagcgcgtgatattcacgagccccatcaaggcgctc
agcaaccagaagtaccgagagctacacgaggagtttcacgatgtggggctgctcacggga
gacatcaccatcaaccccagcgcctcctgcctcgtcatgaccaccgaaatcctgagaagc
atgctctaccgaggctcagagataatgagggaggtggcctgggtgattttcgatgaaatt
cactacatgcggaacccagagcgcggcgtcgtgtgggaagagaccatcatccttctgcca
gacaatgtgcactacgtgttcctctctgccaccatccccaacggcacgcagttcgctgag
tggatctgccacttgcacaaacagccatgtcacgtagtgtccaccgactaccggccgacc
cctctacagcacttcatcttcccagctggcggcgacggcctcctcctggtggttgacgaa
tttctcgacttcaaggaagacaacttcctgcaagcgatgtccctactgcgggaaggaggc
gacccatcccgcaagcgcaagggcggcaataaaggggaatccaatgtcttcaagatcatc
aaactgatcatggaacggaacctgcagcccgtcatcatcttcagcttcagcaagcgcgag
tgcgagacctacgccgtgcagctttcccaactcgacttcaacacggaggaagagaagtgc
ctggtggaggaggtgtttaacaacgccatgagctgcctttcagatgaggaccagaagctg
ccacaggtgcaacgagtgctgcccattctaaagcgaggtattggcatccatcatggtggg
ctgctgcctgtcctgaaagaaaccattgaaattctcttttctgagggcctcatcaaggct
ctctttgccacggagacatttgccatgggcatcaacatgccggcacgcaccgtgctcttc
accagcgcacgcaagtttgacggccgcgaccaccgctggatctcttctggcgagtacatc
cagatgtcgggccgcgcgggtcggcgcggcatggacgagcgcggcaccgtcatcctcatg
gtcgatgagaagatgagccccactgtcggacaccagcttttacagggctcacccgacccg
ctcaacagcgctttccacctcacctacaacatggtgctgaacctgctgcgagtggaggag
atcaaccccgagtacatgctcgagaagtccttcttccagttccagcaatacaaggctgtg
cctgatctcctggccaagttgcaggcactacagggccgttacgctgcgctgtccgtcccg
gacgcggcaagcgccacctcctactaccacatcgagcagcagctgcagcgcctgcacgta
gaggcgcgcgccatcacactgcggccacaacattgcctacacgtgctgcagcctggccgc
ctcgtacaggtcacacatgggaaagaacactttggctggggtgttgtcgtcaactttcag
cgcaaaccaacaagccaggaggagttcacccttgtggtggaggcgctgttgctgtgctcg
gaggaaagtgtgcggaacgcagcaacagaggcgccacggcccccgcagcccaaggagcgt
ggggagctgcaggtggtgccggttgcgctggagctggtggaggcgatcagcacagtgcgg
ctctacatgccaccggaccttcgcacccccgaggctcggcaccatgtcctgaagaccttg
caggaggtgaaggctcgcttcccagacggggtgccactgatggaccccgtgcacgacctc
gggatcaaggaccccgagctggaggccgtgctgcacaagacgagggcctttgctcagagg
aggctcgctcacccgctgcacacgagcccgcagcgtgacgccatccgcgacatctgtgtc
agcaaggcccaggtggcggaggaggtgcgcgccgtcaggaaagaggtgcgccgcgcacac
atgatgctgcagatggacgagttgaagcggcgcaagcgtgtgctgcgccggctcggattc
tgcacacaggccgacgtcatccaagtgaagggccgggtggcctgcgagattaccgccggg
cacgagctgctgctcacggagcttgtgttcgaggggctctttaacgagctctcccccgag
caggccgccgcgctgctcagctgcttcgtcttccaagagaaggcctcggagacgccgaag
ctcgccacggatttggctgaacctctccgaaagatgaaggagtgtgcgcgccgtattgga
cacgtgtccgtggaggccaagctgctgggaagggaggatgcgctcctggatgacatccgg
cctcagctcatggatgtcgtgtacagctgggccctcggagagtctttcttcaccatcacc
accatgaccgacgccttcgagggcagcatcatccgctgtttccggagactggaggagctc
ctaaaggagatgggcaaggcagcgcatgtcattggaaattccgaattggaagaaaagttt
aataaggctgtcactgccatcaagcgcgacatcgtgtttgcgggcagcctgtacctgtaa
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integrated database retrieval system
