Petromyzon marinus (sea lamprey): 116948847
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Entry
116948847 CDS
T09614
Symbol
REXO1
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116948847 (REXO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmrn03009
]
116948847 (REXO1)
Ribosome biogenesis [BR:
pmrn03009
]
Eukaryotic type
Pre-60S particles
RNases
116948847 (REXO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
Motif
Other DBs
NCBI-GeneID:
116948847
NCBI-ProteinID:
XP_032821901
UniProt:
A0AAJ7X5D5
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All DBs
Position
35:complement(3065690..3079498)
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AA seq
1324 aa
AA seq
DB search
MLPSTGYFRSLDCPFYAEARCQRPHCHFKHPRSARNKAGSERRAAEVPGSKTESKDDAYD
PSHPGLLEKLPARNVVATQADDLEAVTRAIEAVKNAMEQEKQKLSRCLQDRKLTYAAHSS
TVDEYDPTAVGPELLRGNVFGPKHVGFTAGSDLLKNNEVSFRSAALEYDPADFSLSKTVE
YNPTPITAKGRTKYTLDSPRDEDPSHYVPKVVACTQQVAPSNKYVVDIKKPTSNMEYDPL
MNFTSMFTPEKESDSKQQKKRHRSSDSRAADTVSYEPSPKDARVATPASNGMGDNSPFGA
APVEGPPCQFSDEDDNDGDDDGAAVVADDNGDSSSNKEVPQSGVVRKVKVKKRAEPVLRE
IAVQCGIGGLSRGDDDNSGKVQEKENHSRLKADRKIKDKSPLEKQTSSGSSKLTDKIKVS
SKLEKNPGLSKGAEVEKSRSLKTKEIKISSKDKSCSSSKGDKDKGSNNKSDKHKNSESAH
SSSNSTVRTEKNKASKGDTNDKKSETVHATKAKDDDKHKHSSKDRKPHLKSRDKKERKSS
SSEKEGRSHDNQRQGKDSALKPHKDGGGTERGHKASKKRKDGNKEDKPAVNLPTRNPAKE
KRNKITQKDLFGDDSEDEDQSVASVSTASLVSKSLKRPLPSSSGSIGGHLKRPKLTSPIR
GVESDIDDSDGGDGDDNDDDDDDDEIDYAAIASEMDFEESDPMEECLRIFNESTEIKKED
KGRRRPSLGQENVEEGSSGVTPVVPLLKKRVAHTSKFETAKPGQAVIRPYRPTAQQVCQA
RLLQAQQRSLTAAPAPASLPLAASPATAARPAASPSTSPFGGKRRVAHGLFTTSLAAGAR
GAVSVNASAGRQAGTAGALTPRQVDATSPAHTPATMMCKTTVVPQRRMAHTPNPSNPAMK
RPLIMADRNCKVPLAVRQRYLNVFIDECLKFCSSEQEAFDRALAEEKVAMERSSSKAIYV
NVAVNVLKKLRSQGNPSPARAPAMSLSRRPLSHEAVLGGKMAAKASFTMNLYGKGQPLES
HLDEKSLFQRLSAYLLTEEQLRENGYPRPDPERCSRAILFTADTKTANKDPLMRICCRCG
TSYSVNLKGDYLRREECTYHYGRAWRQRVSGGWETRYNCCQGSVGSSGCQVAKCHVFDGR
KESLDGFVCTIAKSPVPDRIPGVYALDCEMCYTKQGLELTRVTVVDWQLKPVYDTFVLPD
SEVVDYNTRFSGVTEEDLRDTTTTIRTVQAALLSRLSADSILLGHSLESDLFALKIIHST
VVDTAVVFPHRMGSPYKRALRTLMAEHLQRIIQNDVGGHNSTEDAASCMELMIYKIKEDA
KVKK
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgctgccctccacgggatacttccggagcctcgactgccccttctacgccgaggcgcga
tgccaaaggccgcactgccacttcaagcacccgaggtcggcgcgaaacaaagcgggcagc
gagcgacgagctgcggaagttccaggatcaaaaactgaatcaaaagacgatgcgtatgac
ccgagccaccccggcctcctggagaagcttccggctcggaatgtcgtggcgacccaagcc
gatgacctggaggcggtcacgcgcgccatcgaggccgtcaagaatgccatggagcaggag
aaacaaaagttgtcgcgctgcttgcaggacagaaagctgacctatgccgctcactcaagc
acggtggacgagtatgatcccacagccgtgggcccagaactcttgcgtggaaacgttttt
ggccccaagcatgtgggtttcaccgccgggagcgacttgctgaagaataacgaggtttcc
tttcgttcggctgctctggagtacgatcccgcggatttttcgctgtcaaagaccgtggaa
tataaccccacgccaatcaccgccaagggccgaacgaagtacacgttggacagcccgaga
gatgaagaccccagccattatgtgcccaaggtggttgcctgcacccagcaggttgccccg
tcaaacaagtacgtggtcgatatcaaaaaacccaccagcaacatggagtatgacccgctg
atgaatttcacctccatgttcactccggagaaagagagcgactccaagcagcagaagaag
agacatcggtcgtctgacagccgcgcggctgacacagtctcttatgagccttcgcctaaa
gatgcacgtgtcgcgaccccggccagtaacggcatgggggacaattcccccttcggcgcc
gcaccagtggaggggcctccatgtcagtttagtgacgaggatgacaatgatggtgatgat
gacggtgctgccgtggtcgctgacgacaatggggattccagcagcaataaggaggttccg
cagtcgggtgttgtccgaaaggtcaaggtgaagaagcgagcggagccggtgttgagggaa
atcgccgtgcagtgcgggatcggggggctcagcaggggagatgacgacaattcaggaaaa
gtacaggagaaggaaaaccattccaggttaaaagctgatcggaagataaaagataagagc
cctcttgaaaaacaaaccagctctggtagctccaagttgactgataagataaaagtaagt
tctaaattagaaaaaaatcccggattgagtaaaggggcggaagtagaaaagagtaggtct
ttaaaaactaaagagattaagatttcctcaaaggacaaatcatgtagcagttccaaaggc
gataaggataagggttcaaacaacaaaagcgacaagcacaaaaactctgagagcgctcat
agctcgagtaatagcacagtgagaacagaaaaaaacaaagcttccaagggtgacacaaac
gataaaaaaagtgaaaccgttcacgcaactaaagcaaaggatgatgataaacataaacac
tccagcaaagacagaaagcctcatttaaaaagcagagacaagaaggaaaggaaaagcagt
agctcggaaaaggaaggtaggagccatgacaaccaacgccagggcaaagactctgcactg
aagccacacaaggatggcggtggcacagagagaggtcacaaagccagcaaaaagagaaag
gacggaaataaagaagataaacccgccgtaaatttgcccacgcgtaatcctgccaaggag
aagcgaaataaaatcactcagaaagacctgtttggagatgacagcgaggacgaagatcag
agcgtggcctctgtttccactgcgagtttggtgtccaagtcgttaaaacgtcccctgccg
agcagcagcggcagcattgggggtcatctcaagcggccaaaactcacctcaccgatccgc
ggtgtcgagagtgacattgacgacagcgatggtggtgacggcgacgacaatgacgacgat
gatgatgatgatgaaattgattatgccgccattgcgtcggagatggactttgaggagtct
gatccgatggaggagtgcctgcgcatatttaacgaatcaacagagattaagaaggaagac
aagggacggcgacggcccagccttggtcaagaaaacgtggaggagggcagctccggggtg
accccagtcgtaccgcttctgaagaaaagggttgctcacacctccaagtttgagacggcc
aagcccgggcaggcggttatccggccctaccgccccacggcgcagcaggtctgccaagcg
cggctcctgcaggcgcagcagcggtccctgaccgcggccccggcgccggcgagcctccct
cttgccgcttcgcccgccaccgcggcacggcctgccgcctcgccgtccacctcccccttc
ggagggaagcgccgcgtcgcgcacggcctgttcacgacgtcgctggccgccggtgcgcgc
ggtgccgtctcggtgaacgcgtcggccgggagacaagcggggactgctggcgccctcacg
ccgcgccaagtggacgccacctcgcccgcgcacacgcctgccacgatgatgtgcaagacc
accgtggtgccacagagaagaatggcgcacacccccaaccccagcaacccggcgatgaag
cggccgctgatcatggcggacaggaactgcaaggtgccgctggccgtaaggcagcgctac
ctgaacgtcttcatcgacgagtgcctcaaattctgctcttccgagcaggaggccttcgac
agggcgctggcagaggagaaggtggcgatggagcggagctcgagcaaggccatctacgtg
aacgtggccgtcaacgtcctcaagaagctgcgcagccagggcaacccgagccctgcccgc
gcccccgccatgtcgctgagccgacggccactgtcccacgaggctgttctaggtgggaag
atggcagccaaggccagcttcaccatgaacctgtacggcaaggggcagccactggagagc
cacctggacgagaagtcactgttccagcggctgagcgcgtacttgctgacggaggagcag
ctccgggagaatggatacccccggcctgacccggagcgctgcagtcgagccatcctcttt
actgccgacaccaagacggccaacaaagaccccctgatgaggatctgctgccgttgtggg
acctcctactccgtgaacctcaagggcgactacctgaggcgggaggagtgcacctaccac
tacggccgggcatggcggcagcgcgtgtcgggcggatgggagacgcgctacaactgctgc
cagggtagcgtgggctcgtcaggatgccaggtcgccaagtgccacgtgtttgacgggcgc
aaggagagcctggacggctttgtgtgcaccatcgccaagtcgccggtgcctgacaggatc
cccggcgtctacgcgctcgactgcgagatgtgctacactaagcagggcctggagctgacg
cgcgtcacggtggtggactggcagctcaagcccgtctacgataccttcgtgttgcccgac
agcgaggtggtcgattataacaccaggttttcaggcgtcacggaggaagatctccgggac
acgaccacgaccatccgcaccgtgcaggccgcgctgctcagccggctgagcgccgactcc
atcctgctcgggcacagcctcgagagcgacctcttcgccctcaagattatccacagcaca
gtggtagacacggccgtagtgttcccacaccggatgggttctccctacaagcgcgcgcta
cgcacgctcatggccgagcatctccagcgcattatacaaaacgacgtgggaggtcacaac
tccaccgaggatgccgcctcttgcatggaactgatgatatacaagatcaaggaagacgcc
aaagtaaaaaaataa
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