KEGG   Petromyzon marinus (sea lamprey): 116948970
Entry
116948970         CDS       T09614                                 
Symbol
PRPF38A
Name
(RefSeq) pre-mRNA-splicing factor 38A
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116948970 (PRPF38A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmrn03041]
    116948970 (PRPF38A)
Spliceosome [BR:pmrn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    116948970 (PRPF38A)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    116948970 (PRPF38A)
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 116948970
NCBI-ProteinID: XP_032822193
EnsemblRapid: ENSPMAG00000043840
LinkDB
Position
35:complement(12026869..12043997)
AA seq 314 aa
MANRTVKDAHSIRGTNPQYLVEKIIRTRIYESKYWKEECFALTAELVVDKAMELRFVGGV
YGGNIKPTPFLCLVLKMLQIQPEKDIVVEFIRNEDFKYVRLLGAMYMRLTGTPMDCYKYL
EPLYNDYRKIKRQARSGEFEMIHVDEFIDELLREERVCDIILPRLQKRFVLEVVEELEVR
VSALEEDLDGGESSDDDEDDEDHHEAKRVEVAPLQDVERRKHRDAERPRRTPSPRFRRSK
TPPRRRSRSPKRRSLSPRRERHRSKSPPRRHRSRERERRHRSKSPGQHRSHRHRSHSRSP
DRSKRKSKRSHKGE
NT seq 945 nt   +upstreamnt  +downstreamnt
atggcgaaccggacggtgaaggacgcgcacagcatccgcggcaccaacccgcagtacctg
gtggagaagatcatccgcacgcgcatctacgagtccaagtactggaaggaggaatgcttc
gcgctcacggccgagctggtggtggacaaggcaatggagctgcgtttcgtgggcggagtg
tatgggggaaacatcaagcccactccctttctgtgcctggtgctcaagatgttgcagatc
cagccagagaaagacatcgtggttgagttcatccgaaacgaggacttcaagtatgtgagg
cttctgggagccatgtacatgcggctgactggaacccccatggactgctacaagtatttg
gagccactctacaacgattacaggaagatcaaacgacaggcacggagcggtgaatttgaa
atgatccacgtggatgaattcatcgatgagctgctgagagaggagcgggtttgcgacatt
atcctgcccaggctgcagaagcggtttgtgctggaggtggtggaggagctggaggtgcgg
gtaagcgccctcgaagaggatctggatggaggagaatctagtgatgacgatgaagatgat
gaagaccaccatgaagctaagagggtggaggtggccccgctgcaagacgtggagcgacgg
aaacaccgcgacgccgagcggccgcgacgcacgccctcgccgcggttccgccgcagcaag
acccctccacgcagacggagcagatcaccaaagaggagaagtttgtccccccggcgtgaa
cggcaccgcagcaagagccccccccggcggcaccgatcgcgtgagagggaacggcgtcac
cgatcaaagtcgcccggtcaacatcgcagccaccgccaccgtagccactcgcgctcacca
gatcggtccaagagaaagagcaagcgcagtcacaagggggagtga

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