Petromyzon marinus (sea lamprey): 116948970
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Entry
116948970 CDS
T09614
Symbol
PRPF38A
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116948970 (PRPF38A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116948970 (PRPF38A)
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116948970 (PRPF38A)
Complex C
U4/U6.U5 tri-SnRNP related factors
116948970 (PRPF38A)
BRITE hierarchy
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
116948970
NCBI-ProteinID:
XP_032822193
EnsemblRapid:
ENSPMAG00000043840
LinkDB
All DBs
Position
35:complement(12026869..12043997)
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AA seq
314 aa
AA seq
DB search
MANRTVKDAHSIRGTNPQYLVEKIIRTRIYESKYWKEECFALTAELVVDKAMELRFVGGV
YGGNIKPTPFLCLVLKMLQIQPEKDIVVEFIRNEDFKYVRLLGAMYMRLTGTPMDCYKYL
EPLYNDYRKIKRQARSGEFEMIHVDEFIDELLREERVCDIILPRLQKRFVLEVVEELEVR
VSALEEDLDGGESSDDDEDDEDHHEAKRVEVAPLQDVERRKHRDAERPRRTPSPRFRRSK
TPPRRRSRSPKRRSLSPRRERHRSKSPPRRHRSRERERRHRSKSPGQHRSHRHRSHSRSP
DRSKRKSKRSHKGE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccggacggtgaaggacgcgcacagcatccgcggcaccaacccgcagtacctg
gtggagaagatcatccgcacgcgcatctacgagtccaagtactggaaggaggaatgcttc
gcgctcacggccgagctggtggtggacaaggcaatggagctgcgtttcgtgggcggagtg
tatgggggaaacatcaagcccactccctttctgtgcctggtgctcaagatgttgcagatc
cagccagagaaagacatcgtggttgagttcatccgaaacgaggacttcaagtatgtgagg
cttctgggagccatgtacatgcggctgactggaacccccatggactgctacaagtatttg
gagccactctacaacgattacaggaagatcaaacgacaggcacggagcggtgaatttgaa
atgatccacgtggatgaattcatcgatgagctgctgagagaggagcgggtttgcgacatt
atcctgcccaggctgcagaagcggtttgtgctggaggtggtggaggagctggaggtgcgg
gtaagcgccctcgaagaggatctggatggaggagaatctagtgatgacgatgaagatgat
gaagaccaccatgaagctaagagggtggaggtggccccgctgcaagacgtggagcgacgg
aaacaccgcgacgccgagcggccgcgacgcacgccctcgccgcggttccgccgcagcaag
acccctccacgcagacggagcagatcaccaaagaggagaagtttgtccccccggcgtgaa
cggcaccgcagcaagagccccccccggcggcaccgatcgcgtgagagggaacggcgtcac
cgatcaaagtcgcccggtcaacatcgcagccaccgccaccgtagccactcgcgctcacca
gatcggtccaagagaaagagcaagcgcagtcacaagggggagtga
DBGET
integrated database retrieval system