Petromyzon marinus (sea lamprey): 116949354
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Entry
116949354 CDS
T09614
Symbol
DCP1B
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116949354 (DCP1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116949354 (DCP1B)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116949354 (DCP1B)
mRNA degradation factors
5'-3' decay
Decapping complex
116949354 (DCP1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
DUF4471
Motif
Other DBs
NCBI-GeneID:
116949354
NCBI-ProteinID:
XP_032822467
UniProt:
A0AAJ7TTP9
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Position
36:5916564..5933019
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AA seq
606 aa
AA seq
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MATDRVRGISLAALQQRDPYVSGIVDVASQVALYSYNTASNEWEKTEVEGTLFVYARSAS
PHNGFTIMNRLSMDNLIQPITKDLDFKLQDPFLLYRIADLSIHGIWFYDKNDCLRIANLM
TELAQKSSGKSTESREACTEKSVNILEMLNRAREVYQQTRPGQETNAAGAPGTTEILAVA
PMTSLTHQQVANPPEDSCNRRLSVAALLGTCAQTDGGCNAAPCDSVSQGTKSSCKLAVAR
ALSYEQAAPSQHTTAGERHGFQQVAPQAHLPYADASVHEPPPPPPPHPEGRCQLPAQVHQ
CLPYVVECNKDRGENEQLLQKLHGNRIPAKQGAAMPIVQSCPDFGSPVTARQMPPSTADS
GAATGQVWHNVRLPHAPAMQPGSCFVPQAGGPESQGAPHLRSALQPADLHVVLKSGQTPG
AVPQGNGFQPVAGLVQSNTEPPLFDLLQKLQIVKPEPQHQHQQQHQQKHQHQQQHQQQHQ
QQPGHTGCSETQGPIVTLLSQEDLKKLPKSDRENLTLPFPHITGTMAAGVLLSPQTFQQS
SVKLSAPNAPIAQGMPPQMAHETSHGVVSRSHLQETLIHLLKNDNEFLNVIYEAYLESSR
KASLNL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggccacggacagggtgaggggcatcagtctggcggcgctgcagcaacgcgacccgtac
gtctcgggcatcgtggacgtggccagccaggtcgcgctctacagttacaacacggcctcc
aacgagtgggagaaaactgaagttgaaggtacattatttgtatatgccaggtctgcatcc
cctcacaatggctttacaataatgaacaggctgagcatggacaacctgatccagcccatc
acaaaagatctggacttcaagctgcaggatcctttcctgctttacaggattgcagactta
tccatacatggcatctggttctatgacaagaatgactgccttcggattgcaaatttgatg
accgagctagctcaaaaatcgagtgggaaaagcacagagagtcgtgaagcatgcacagag
aaatctgttaatatcctggagatgctgaaccgagcacgggaggtgtaccagcagacgaga
ccgggacaggaaacaaatgcagccggtgcccctggcaccacagagatactcgccgttgcc
ccaatgacaagtttgacgcatcaacaagtggcaaatcccccagaggactcctgcaacaga
cggctgagcgtggcggcgctgcttggtacatgcgcacagacggacggtggatgcaacgcc
gccccttgtgactccgtgtcccaggggaccaagtcttcctgcaaactggcagtggcgcgg
gccctatcctacgagcaggctgcaccctcgcagcatacgacagctggagagagacatggc
ttccagcaggtggcgccgcaggcccacttgccgtacgccgatgcgtctgtccacgagccg
ccgccgccgccgccgccacaccctgagggccggtgtcagttgcccgcacaggttcaccag
tgcctgccgtatgtggttgagtgcaacaaagacaggggcgagaatgagcagctgctgcag
aagctgcacggcaaccgcattcccgcgaagcagggggccgcaatgcccatcgttcaaagc
tgcccagatttcggcagcccggtgacagctcggcagatgccgcccagcaccgcagactcg
ggcgctgccacgggccaggtttggcacaacgtcaggctgccccacgcgcccgccatgcaa
ccgggaagctgctttgttccgcaagcaggtggcccagaatcccagggcgcacctcatctg
aggagcgcgctgcagcccgccgatttgcacgtggttttgaagagcggacagactccgggc
gcggtgccgcaggggaacggctttcagccagtggctgggctcgtgcagtcgaacacagag
ccacctctctttgacttgctgcagaaactgcagatagttaaaccggagccgcagcatcag
caccaacagcagcaccaacagaagcaccagcaccaacagcagcaccaacagcagcaccag
cagcaacctggacataccggttgcagtgaaacacaagggcccatagtgacgcttttgtca
caggaggatttgaaaaagttgccaaaaagtgatcgtgaaaacctcacattaccatttcct
cacataactgggacgatggcggccggagtcctgctttcaccgcagacatttcagcagtcc
tccgtgaaattgtcagcgcccaatgctcccattgcacaaggcatgcctccccagatggcc
cacgagacttctcatggtgtcgtgagcaggtcccacctgcaggaaacccttattcacctg
ctcaagaacgataatgaattcctcaatgtcatctatgaagcatacctggaaagttcaaga
aaagcctctctcaatctttaa
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