Petromyzon marinus (sea lamprey): 116949355
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Entry
116949355 CDS
T09614
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmrn03016
]
116949355 (RTCB)
Enzymes [BR:
pmrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116949355 (RTCB)
Transfer RNA biogenesis [BR:
pmrn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116949355 (RTCB)
Prokaryotic type
tRNA splicing ligases
116949355 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
116949355
NCBI-ProteinID:
XP_032822469
UniProt:
S4RM17
LinkDB
All DBs
Position
36:5934412..5958133
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AA seq
505 aa
AA seq
DB search
MSRSYNDEIAFLEKIDKNSWRIKKGFVPNMQVEGKFFVNDQLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHKSIGLPDVHSGYGFAIGNMAAFDMEDPTSVVSPGGVGFDI
NCGVRLLRTNLEESDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDQ
HAARKMGIDHTGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIKS
QEGQDYLKAMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKIRTLLIHRKGSTRAFPPHHPLIPVDYQLIGQPVLIGGTMGTCSYVLTGTEEGMR
QTFGTTCHGAGRALSRAKSRRNLDYQDVLNKLADLGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHSAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctcctacaatgacgagatcgccttcctcgagaagatcgacaagaacagctgg
cgcatcaagaaaggattcgtgcccaacatgcaggtcgaagggaagttctttgttaacgac
cagctggagaagctcatgtttgaggagctcagaaatgcctgcagaggaggaggaattggt
ggatttctgccagctatgaagcagatcggcaatgtggctgcattgcccggcattatacat
aaatccattggcttgccggatgttcattctggctatggctttgccattggtaacatggct
gccttcgacatggaagaccccacctctgtggtgtcgccaggcggcgtgggctttgacatc
aactgcggtgtgcggctgttgcgcacgaacctggaggagagcgacgtgcagcctgtgaag
gagcagctggcgcaggcgctgttcgatcacatccccgtcggggtcggttccaagggagtc
atccccatgggtgccaaggacttggaggaggctctggagatgggagtggactggtctctg
cgcgaaggctatgcctgggcagaggacaaagaacactgcgaggagtatggcaggatgctg
caggctgaccccaacaaggtctcctctaaggccaagaagagggggctaccacagctgggc
acactgggtgctgggaaccactacgctgagattcaggtggtggatgaaatctttgaccag
cacgccgcacgcaagatgggcatcgaccacaccgggcagatctgcgtcatgatccatagc
ggcagtcgggggcttggtcaccaggtggccacagatgcgctggtggcgatggagaaggca
atgaagcgagataagatcatcgtgaacgaccggcagcttgcctgcgctcgcatcaagtcg
caggaggggcaggactacttaaaagccatggccgctgccggaaactacgcctgggtcaac
cgctcctccatgactttcctcacccgtcaggcttttgcaaaggttttcaacacgacgccc
gacgacctggacatgcacgtgatctacgacgtctcgcacaacatcgctaaggtggaggag
cacatcgtggatgggaagattcgaacgctgctcattcatcgcaagggatcgacacgagct
ttccccccacaccacccgctcatccccgtcgactaccagctgatcgggcagccggtgctc
atcggcggcaccatgggcacctgcagctacgtgttgacgggcacggaggagggcatgagg
cagactttcggtaccacgtgccacggagcggggagggccctgtctcgcgccaagtctcgc
cgcaacttggactaccaggatgtgctcaacaaacttgccgacctaggcatcgcgatccgg
gtcgcctcgcccaagcttgtcatggaggaggcgccagagtcgtacaagaacgtgacggat
gtggtggacacgtgccactcggctggcatcagcaagaaggccatcaagctgcgacccatt
gccgtcattaagggctga
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