Petromyzon marinus (sea lamprey): 116949646
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Entry
116949646 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF2-like
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04120
Ubiquitin mediated proteolysis
pmrn04137
Mitophagy - animal
pmrn04144
Endocytosis
pmrn04340
Hedgehog signaling pathway
pmrn04350
TGF-beta signaling pathway
pmrn04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116949646
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116949646
04350 TGF-beta signaling pathway
116949646
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116949646
04137 Mitophagy - animal
116949646
09144 Cellular community - eukaryotes
04520 Adherens junction
116949646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116949646
04121 Ubiquitin system [BR:
pmrn04121
]
116949646
03029 Mitochondrial biogenesis [BR:
pmrn03029
]
116949646
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
116949646
Membrane trafficking [BR:
pmrn04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
116949646
Autophagy
Mitophagy
Other mitophagy associated proteins
116949646
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
HECT type E3
116949646
Mitochondrial biogenesis [BR:
pmrn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116949646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
DUF7350
Motif
Other DBs
NCBI-GeneID:
116949646
NCBI-ProteinID:
XP_032823085
UniProt:
A0AAJ7X6J1
LinkDB
All DBs
Position
37:3382387..3414537
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AA seq
760 aa
AA seq
DB search
MSNAVTRRNGATKLRLTVLCAKNLAKKISSVRLPDPFAKIMVEGSGECHSTDTVRNTLDP
KWNQHYDLYISKSDSITISVWNRKKIHKKQGAGFLGCVRLLSNLISRIKDTGCESRLDLC
RLGQSSNDTVRGQIVLSLQSRDRIGTGGAVVDCGGLFPNDLPEGWEERRSTMGRTQYVNH
VTRTAQWERPTRPAAECGGPGCVAPGQEGTPLRAGAEGADGRATTAGEPSAAPAAPGSPE
LGTRSQRHRNFLSRTHLHQPPDLPEGYEQRTTQQGQIYFLHTQTGVSTWHDPRVPRDLSH
VNCEDLGPLPAGWETRSTATGRVYFVDHNNRTTQFTDPRLSANLHHLLKNRQTQQGPCPP
GLPPGPPPPPADEECPVPRYKRDLVQKLKCLRQELALQQSQAGHCRLEVSRTEIFEESYR
QVMKMRPRDLKKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQ
INPDSAINPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLADMETVDPE
LHKSLVWILENDITGVLENTFCVEHEAFGQLVQHELKPNGKNLPVIEANKREYVRLYVSW
RFLRGIEAQFLALQKGFNELIPQPLLKSFDEKELELIIGGLGKIDVSDWKSNTRLKHCTP
ESSVVRWFWRAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHLIDAKTD
NLPKAHTCFNRIDIPPYETYEKLYEKLLTAVEETCGFAVE
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgcggtcacgcgacggaacggtgccaccaagctccgacttacggtgctctgt
gccaagaacttggccaagaagatttcttcagtgaggctgccggatccgttcgccaagatc
atggtggagggctcgggcgagtgccactccaccgacaccgtcaggaacactctggacccc
aagtggaaccagcactatgatctctacatcagcaagtccgactccatcaccatcagcgtg
tggaaccgcaagaagatccacaagaagcagggcgccggcttcctgggctgcgtgcgcctg
ctctccaacctcatctctcgcatcaaggacacgggatgtgaatcgcgcctggacctctgc
agactcggccaaagcagcaacgacaccgtcaggggacagatcgtcttgagcttgcagtcg
cgcgatcgcattggcactggtggagcagtggtcgactgcgggggcctgttccccaacgac
ctgcccgaggggtgggaggagcggaggtctaccatgggacgcacacagtacgttaaccac
gtcacgcggaccgcacagtgggagagaccaaccaggccggcggccgagtgcggcggacca
ggctgcgtcgctccgggccaggaggggacgccgctgcgcgcgggggcagagggcgcagac
ggtcgcgccaccaccgccggggagccgtcggcggcgccagcggcacccggctcgccggag
ctgggcacgcgctcgcagaggcaccgcaacttcctgagccgcacgcacctgcaccagcca
ccggatctgcccgagggctacgaacaacgaacgacccagcagggacaaatttacttcctc
cacacacagaccggggtcagcacgtggcacgaccctcgcgttcccagggacctgtcgcac
gtgaactgcgaggacctgggccctctgcccgccggctgggaaacgcgcagcaccgccacg
ggacgcgtctatttcgtcgaccacaacaaccgcaccacacagttcaccgacccgcgcctc
tccgccaacctgcaccaccttctcaaaaatcgacagacgcaacagggcccgtgccccccg
ggcctccctccgggcccgccgccaccccccgcggacgaggagtgccccgtgccccgctac
aagcgcgacctcgtgcagaagctcaagtgcctacggcaagagctggcgctgcagcagtcg
caggccgggcactgtcggctcgaggtctcccgcacggagatctttgaggagtcgtaccga
caggtgatgaagatgaggccccgcgacctcaagaagcggctcatggtgaagttccgcggc
gaggaggggctggactacggcggcgtcgccagggagtggctgtacctgctgtcccacgag
atgctcaacccgtactacgggctcttccagtactcgcgcgacgacatctacacactgcag
ataaaccccgactcggccatcaaccccgagcacctttcctacttccactttgtgggacgg
atcatgggcatggcggtgttccacggccactacatcgacggtggattcacgctgcccttc
tacaagcagctgctgggcaagcctatcacgctggccgacatggagacggtggaccctgag
ctccacaagtcactcgtctggatcctggagaacgacatcacgggcgtgctggagaacacg
ttctgtgtggagcacgaggcgttcggccagctggtgcagcacgagctcaagcccaacggc
aagaatctgcccgtgattgaggccaacaagcgggagtatgtcaggctgtacgtgagctgg
cgattcctgcgagggattgaggcccagttcctggccctgcagaaggggttcaacgagctc
attcctcagccgctgctcaaatccttcgacgagaaagagctggagctgatcatcggcgga
cttggcaagatcgacgtgagtgactggaagtctaacacacggctcaagcactgcacgccc
gagagcagcgtggtgcggtggttctggcgcgccgtggagtcctttgacgaggagaggagg
gcgcgcctcctgcagttcgtcaccggctcgtcgcgcgtgcccctgcaggggttcaaggct
ctgcaaggcgcagcagggcccaggctgttcacgatccacctgattgacgccaagacggac
aaccttcccaaagctcacacctgcttcaaccgaatcgacatcccgccgtacgagacgtac
gagaagctctacgagaagctcctgacggccgtggaggagacgtgcggattcgctgtcgag
tga
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