Petromyzon marinus (sea lamprey): 116949757
Help
Entry
116949757 CDS
T09614
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03410
Base excision repair
pmrn03420
Nucleotide excision repair
pmrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116949757 (LIG1)
03410 Base excision repair
116949757 (LIG1)
03420 Nucleotide excision repair
116949757 (LIG1)
03430 Mismatch repair
116949757 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116949757 (LIG1)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116949757 (LIG1)
Enzymes [BR:
pmrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116949757 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
116949757 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116949757 (LIG1)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116949757 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116949757 (LIG1)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116949757 (LIG1)
NER (nucleotide excision repair)
Other NER factors
116949757 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
116949757 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
116949757
NCBI-ProteinID:
XP_032823288
UniProt:
A0AAJ7TSF6
LinkDB
All DBs
Position
37:11980479..12011311
Genome browser
AA seq
1081 aa
AA seq
DB search
MQRSIASFFQPAKGQQPDKIIPKQPEKTKPKPEKVVTKTPLKAKKNGCSPPAADNTDSPV
KRSTKKTRRVLESDDDDNDDDDNIDEEARNNSVLKSTGSEKSKTTENTVTPDKNAMRVKR
ETPERKPTPEQKKTPKNSKVLVEKDKTAGHEVKSNGKSKESPGKQSDGEVDTSTSEPEAG
KAKETENNVDTKTGTSSPTLHTSPEGNLVIPKRKTARKQLPKRKLDASPEASDSSKKPKQ
EDTGDTPAKKQETIPTSKEQGQNVAEPMDIDTSATEAEITKPKDKANTSADSAQEPTAEE
ASPERENKSAEKKKKMEERIISPDKADDSSKQTPKKKATEKPAPNSKGKEVMSSFFAPRK
SCAKVMEEEQKVPEENKNTADEEVEEKKEKTDKEKAVDKDVTPSHKPISSFFGGGKVETT
PGSQENYNPAKSHYHPINDACWEHEQRVPYLAVARTFEKIEEESARLKIVETLSNFLRSV
IALTPDDLLPCIYLCLNQLGPAYLGQELGIGETILMKAVAQATGRQLDKIKAEAQEKGDL
GIVAECSRSTQRTMFTPPKLNATTVFSKLKDISRLTGNTSMNKKIDVVKTMFVACRHSEA
RYLIRSLGGKLRIGLAEQSVIAALAQAVSLTPPGQEFPPKVLDGGKGMSPDSRKAWIEEK
NQILKQTYCELPNYDVIVSTLLKEGLDNLPKFCKLTPGVPMKPMLAHPTKGIGEVLKRFD
EAAFTCEYKYDGERAQIHLLENGDLHIYSRNQENNTTKYPDIISRFSKVKKEHVRSCVID
SEAVAWDQEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVKEPFRRRR
ELLRAAFEEVEGEFMFATAMVGSNTEEIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRS
HNWLKLKKDYLEGVGDTLDLLVVGGYHGRGKRTGTYGGFLLACYDDENEEYQTICKIGTG
FKDEDLEKHAAFFKEHVIERPRSYYRFESGAEPDHWFDAVQVWEVKCADLSVSPVYKAAN
GLVDKQKGVSLRFPRFLRVRDDKKPEDATSSSQVAELYNKQQQIQNQKSSVAEDAGEEEF
Y
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatccatcgcgtcttttttccagccagcaaagggccagcagcctgataaaata
atacccaagcagcctgagaaaaccaagccaaaaccagaaaaagtagtgactaaaacgcca
cttaaagcaaagaagaatggttgctctccacctgctgctgacaacaccgattcccccgtt
aaaagatctacaaagaaaacgcggcgagtcctggagagcgatgacgacgataacgatgat
gacgataacattgacgaggaagcacgtaacaacagtgtgctgaagagcacaggctcggaa
aagagcaaaaccacggagaacaccgttaccccggataagaatgcgatgcgggtaaagagg
gagaccccagaaaggaagccaacaccagagcagaagaagactcctaagaatagtaaagtc
ttagtggagaaggacaaaacagcagggcatgaggtgaagtcgaatgggaagagtaaggaa
tcacctggcaaacagagtgacggggaggtcgacacctctacctctgaacccgaggcaggc
aaggcaaaggagactgaaaacaatgtggataccaagactgggacttcaagtcccacgctg
cacacatccccggaaggaaatttggtcatcccaaagcgcaagacagcccgtaaacaatta
cctaagcggaagctcgatgcctcccctgaagcctcggattcctccaagaagcccaaacaa
gaggacacaggagacacaccagccaagaagcaggagacgatacccacgagcaaagagcaa
gggcagaatgtggccgagccaatggacattgatacgtcggcgactgaagcagagatcacg
aaaccaaaggacaaagcaaacacaagcgcagactccgcacaggagcccactgctgaggaa
gcctcccccgagcgtgaaaataaatctgcggagaagaagaagaaaatggaggaaaggata
atttctccagataaggcagatgattcttcaaaacagacaccgaagaagaaagcaacagag
aagccagcccccaacagcaagggcaaagaagtcatgagcagcttttttgcgccgaggaag
agctgcgccaaggtcatggaggaagagcagaaggtgccggaggagaataagaacacggca
gatgaagaggtagaggaaaagaaagagaagacggacaaggaaaaggctgttgacaaagat
gttacaccgagccacaagcctattagcagcttttttggaggtggaaaagtggagacgaca
ccgggctcacaagaaaactacaatcccgcgaaaagccattaccacccaataaatgatgcc
tgctgggaacatgaacaaagggttccctatcttgccgtagcaaggacgtttgagaaaatt
gaggaggagtctgctcggctcaagatcgtggagacgctgagcaacttcctgcgttctgtc
atcgcgctcaccccggacgacctccttccatgcatttacctgtgcctcaatcagctgggc
cctgcctacctgggccaggagctcggcatcggggagaccatcctcatgaaagccgttgct
caggctaccgggcggcagctggacaagatcaaggcggaggcccaggagaagggagacctg
gggattgtggccgagtgtagccgcagcacccagcgcaccatgttcacccctcccaagctg
aacgccaccacggtgttcagcaagctcaaggacatctcccgcttgacgggaaatacttct
atgaacaagaagattgatgttgtgaagaccatgtttgtggcctgccggcactcagaggct
cgctacctcatcaggtcactgggtgggaagctgcgtattgggttggcagaacagtccgtc
atcgctgccctcgcccaagccgtcagcctgacacctcctggacaagagttcccaccgaag
gtactggatggtggaaaaggcatgtcaccagactctcggaaggcatggatagaagaaaag
aaccagattctgaagcagacctactgtgaattgccaaactacgacgtgatagtgtcaacc
ctgctcaaagagggcctggataacttgcccaagttctgcaaactcaccccgggagtgccc
atgaagccaatgctggcacacccaaccaagggcattggagaagtgctcaagaggtttgat
gaagcagccttcacttgcgagtacaagtatgatggggagcgggcacagattcatctgttg
gagaatggggacctccatatctacagccgaaaccaggagaacaacaccaccaagtacccc
gacatcatcagccgttttagcaaggtcaagaaggagcacgtgcgttcgtgtgtcatcgac
tcggaggccgtagcctgggatcaggagaagaagcagattcagcccttccaggtgctcacc
actcgcaaacggaaggatgttgatgcctcagaaattaaagttcaagtctgtgtctatgcc
tttgatctgctctacttgaatggggagtcgctggtgaaggagccgttccggcggcggcgg
gagctactgcgtgctgcgtttgaggaggtggaaggggaattcatgtttgccacggccatg
gtcggctcgaacacggaagaaattgcagagttcctggagcaatctgttcgtgattcttgt
gaaggcctcatggtgaagactcttgatgtggatgccacctatgagattgccaagaggtcc
cacaactggttgaagctaaagaaggactacctggagggggttggagacaccctggacctg
ctggtggtaggtggataccatggccggggcaagcgcacgggcacgtacgggggcttcctg
ctcgcttgctacgacgacgagaacgaggagtaccagacaatctgcaagattggcacggga
tttaaggatgaagacctggagaagcatgctgccttttttaaggagcatgtgattgagcgt
ccgcggtcgtactaccgcttcgagagtggcgcagagcccgaccactggttcgacgctgtg
caggtgtgggaagtcaagtgcgccgacctgtcggtgtctccggtctacaaggcagccaat
ggcctggtggacaagcagaagggcgtgtccctgcgctttcctcgctttcttcgcgtgcgc
gacgacaagaagccagaggatgccaccagcagctcgcaggtggcagagctttataacaag
cagcagcagatacagaatcagaaatcatcggtggccgaggatgcgggcgaagaagagttt
tactag
DBGET
integrated database retrieval system
