Petromyzon marinus (sea lamprey): 116950197
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Entry
116950197 CDS
T09614
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03082
ATP-dependent chromatin remodeling
pmrn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116950197 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116950197 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmrn01009
]
116950197 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116950197 (SMARCB1)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116950197 (SMARCB1)
Protein phosphatases and associated proteins [BR:
pmrn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116950197 (SMARCB1)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116950197 (SMARCB1)
SWI/SNF complex
116950197 (SMARCB1)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116950197 (SMARCB1)
PBAF complex
116950197 (SMARCB1)
SWI/SNF complex
116950197 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
116950197
NCBI-ProteinID:
XP_032823684
UniProt:
A0AAJ7X6U6
LinkDB
All DBs
Position
38:complement(6169403..6176053)
Genome browser
AA seq
403 aa
AA seq
DB search
MALSRTYGPKPIKFQLEDAGEWFMIGSEVGNYLRMFRGSLYKKYPSLWRRLATMDERKKI
VASSHGEATSRWEWGQCRGKARTSDDRYHGYTTLATSVTLLKACEVEEILEGNDDKYKAV
SISTEPPAYLREQKPKRPNQWVPAMPNSSHHLDAVPCSTPINRNRMGRDKKRTFPLCFDD
HDPAVIHENAMQSEILVPIRLDMEIDGQKLRDTFTWNMHEKLITPEMFAEILCDDLDLNP
LSFVPSIAAAIRSQVEAFPTDSILDDQSDQRVIVKLNIHVGNISLVDQFEWDMAEKENSP
EKFALRLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFRSVPRPCKSENPLPIVEIAIRN
AGDADAWCPFLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagtcggacgtacgggcccaaacccattaagttccaactcgaggacgccgga
gaatggttcatgatcggctccgaggtggggaattacctgcgcatgttcaggggctccctg
tacaaaaagtacccttcgctatggcgccgtttggccacaatggacgagcgcaagaagatc
gtcgcctcgtcgcacggtgaggcgacgagccgttgggaatggggacagtgcaggggcaag
gcgaggacgtcagacgacagataccatggctacacaaccctggccaccagtgtgacattg
ctcaaggcctgcgaggtggaggagatcctggaaggcaatgatgacaaatacaaagcagtc
tccattagcactgagccacctgcctaccttcgagagcagaagccaaagcggccgaaccag
tgggtgccagcgatgcccaacagctctcaccatctcgacgcagtgccttgctccacgccc
attaaccgcaaccgcatgggccgcgacaaaaagcgcactttcccgctctgtttcgatgac
cacgacccggcagtgattcatgagaacgcgatgcagtccgaaattctggtgcccattcgt
ctggacatggagatcgatggacagaagctcagagacacttttacgtggaacatgcatgag
aagctgatcacgccagagatgtttgccgagatcctgtgcgacgacctggatctgaacccg
ctgagttttgtgccatccatcgcagctgcgattcgcagccaagtggaggccttccctact
gacagcatcctcgacgaccagagtgaccagcgggtcatcgtcaagctcaatatccacgtg
gggaacatctcgctggtggatcagtttgaatgggacatggcagagaaggagaactcgccg
gaaaagtttgcgctccggctttgctcggagctgggactgggtggagagtttgtcactact
attgcctacagcatccgtggccagctcagctggcaccagcgcacgtatgccttcaggtcg
gtgccacgcccttgcaaaagtgagaacccgctgccgatagtggagattgccatccggaat
gctggcgatgccgatgcctggtgccccttcctggagaccctcactgatgctgagatggag
aagaagattcgggaccaggacaggaacactcggcgtatgcgacgactggccaacactgct
ccggcttggtag
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