Petromyzon marinus (sea lamprey): 116950263
Help
Entry
116950263 CDS
T09614
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03420
Nucleotide excision repair
pmrn03430
Mismatch repair
pmrn03440
Homologous recombination
pmrn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116950263
03420 Nucleotide excision repair
116950263
03430 Mismatch repair
116950263
03440 Homologous recombination
116950263
03460 Fanconi anemia pathway
116950263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116950263
03032 DNA replication proteins [BR:
pmrn03032
]
116950263
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116950263
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116950263
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116950263
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116950263
MMR (mismatch excision repair)
116950263
DSBR (double strand breaks repair)
HR (homologous recombination)
116950263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
116950263
NCBI-ProteinID:
XP_032823833
UniProt:
A0AAJ7TW74
LinkDB
All DBs
Position
38:10214864..10242626
Genome browser
AA seq
636 aa
AA seq
DB search
MIGHGGYTKFGITDGAVAQIVEGKTPIRPVVQVLALKPVPNTQGNTVERYRVLISDGVHS
HSSVMLATQLNPLVVQGKVKTHTLCRLNKFILNDMKDGRRVVVVMEMDVVMSAEEVGGKI
GNPQPHTDGGSKAQQGNQTVAANGGGGAGGGGYLGGGAGTGRGGGGGFGAGGGGPMVKAA
SGGSSAYHPAPPMTPGGSAVRVVPITSLNPYQNKWTIRARVTNKQNIRTWSNSRGEGKLF
SMDLTDESGEIRATAFKEQCDKFFPIIQMNQVYYISRGSLKAANKQFTAIKNDYEMTFNN
DTTVVPCPDTHELPMVQYDFQPIASLQDRDKDSILDVLGVCTSFEDPTKITIKSSNREVS
KRNIQVVDDSCKTVSVTLWGTEAEMFNGANQPVLALKGVRLSDFGGRSLSFISSSLMVLN
PDIPEAYKLRSWFDREGQNMETVSISEQRFGGSSFMESQWKTLSQVKMENLGHGDKADYV
TVKGSIISIKKDNCLYQACPKLDCNKKVLDLNNGSFRCEKCDAEVPNFKYRLILQANIVD
YTDNQWVTCFQEQGESILGMKTEALGDLKDSDDQGAYEQVFQNANFTTYIFRMRVKLENY
NDESRIKMTIMEVRPCDPSEHSKRLITEIRKMALSD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgatcggccacggcggctacacgaagttcgggatcacggacggggccgtggcgcaaatc
gtggaagggaaaacccccattaggccggtggtgcaggttctggctctcaagccggtgccc
aacacgcagggcaacactgttgagcgctatcgcgtgctcatcagcgacggggtccactcc
cactcgtccgtcatgttggcgacacagctgaacccgcttgtggtgcagggcaaggtgaag
acccacacgctgtgccggcttaacaagttcatcctcaacgacatgaaggatggcaggaga
gtggtcgtcgttatggagatggacgttgtgatgtcggccgaggaggtaggcgggaagatc
gggaacccccagccccacacggatggaggcagcaaggcgcagcaaggtaaccagacagtg
gcggcaaatggtgggggaggcgcgggaggtggagggtaccttggaggcggtgccggcact
ggtcgtggcggtggcggtggctttggtgctggcggggggggacccatggttaaggcagcg
agcggcggctcctccgcgtaccaccccgctccgcccatgactcctggcggctcggccgtc
cgtgtggtgcccatcaccagcctcaacccttaccagaacaagtggacgatccgtgcgcgg
gtcaccaacaagcagaatatccgcacgtggagcaactcgcgcggggaggggaagctgttc
tccatggacctgacggatgagagtggagagatcagagccacagccttcaaggagcagtgc
gacaaattcttcccgatcatccagatgaaccaggtttactacatctcccgggggtcgctg
aaagcagccaacaaacagttcacggccatcaagaacgactacgagatgacgttcaataat
gacaccactgtggtgccgtgccccgacacccacgagctgcccatggtgcagtatgacttc
cagcccatcgcttccctccaggaccgtgacaaggactccatcctggacgtgctgggcgtg
tgcacgagcttcgaggaccccaccaagatcaccatcaaatcgagcaaccgtgaggtcagc
aagcgcaacatccaggtcgtcgacgacagctgcaagacggtcagcgtgaccctgtggggc
accgaggcggagatgtttaacggcgctaatcagcccgtgctggccttgaagggcgtgcgc
ctttccgactttggcggccgctccctctcgttcatcagttccagcctcatggtgttgaac
cccgacatccctgaggcctacaagctgcgcagctggttcgatcgcgagggccagaacatg
gagacggtgtcgatctccgagcagcgcttcggcggcagctccttcatggagagccagtgg
aagacgctgtcccaagtgaagatggaaaaccttggccatggtgacaaggccgactacgtg
acggtgaaaggctccatcatctccatcaagaaggacaactgcctgtaccaggcgtgcccc
aagctcgactgcaacaagaaggtgctcgacctcaacaacggcagcttccgctgcgagaag
tgcgacgccgaggtgcccaacttcaagtaccgcctcatcctgcaggccaacatcgtggac
tacactgacaaccagtgggtgacctgcttccaggagcagggggagagcatcctgggcatg
aagacggaggctctcggggaccttaaggactcggatgaccaaggcgcctacgagcaggtc
ttccagaacgccaacttcaccacctacatcttccgcatgcgggtcaagctggagaattac
aacgatgagtctcgcatcaagatgaccatcatggaggtgcggccgtgcgatcccagtgaa
cacagcaagaggttgatcacggagatccgcaaaatggccctgagcgactga
DBGET
integrated database retrieval system
