Petromyzon marinus (sea lamprey): 116950291
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Entry
116950291 CDS
T09614
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116950291 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116950291 (THOC5)
03041 Spliceosome [BR:
pmrn03041
]
116950291 (THOC5)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116950291 (THOC5)
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116950291 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Cyclin_N
Motif
Other DBs
NCBI-GeneID:
116950291
NCBI-ProteinID:
XP_032823884
UniProt:
A0AAJ7TTP3
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All DBs
Position
38:11663129..11697285
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AA seq
749 aa
AA seq
DB search
MSDKKRKGKAPRGGGGGGDSTASGGGGVGVAVGADRDMKKPRVETEQEVTRVYSDEADVE
TREPEADELLYADTCRELQRLMGEVDELKSQGMRHNAPEIEERKTQVCIHFMTLKKLNRL
AHIRCKKGRDATYENKQKVDALHLQLQNLRYEVMHLQKEITKCLEFKSKHEEIELVSVEE
FYRDAPPEISKEEITRKEPHLQTLARLDWELEQRKRLTEQYSESIGSKDKIAKDIEVKRE
HLNNLYPQLNAVLQATVPLQECLAMPFDQTHKQADVARHLPAPLYVLFVQASAYAQACAT
RLPTGSEPPGKDKRLCVSVEGDVDEAKALAKQTEESPDDESDSDQEEEAPQTKRRRATLG
VKLEDKRKQLLRRHPLCVALDISCKANKSTLHLQFRYLPALHVVTVKARVGASEQPSSIS
GGNDVPCRTSGEQTHRGANTAPQRSRDAKHTQPKQSKGDLLTPDSLLTCLYPGDHGNDSP
NPANRFHLQRLGMESLGSYVQEVGRPYVWVQWLAGLHFPAQPTEQSVSAQSVLSASHMET
TVRLLRMRLLGRLALQRQFAALEHCILPVSAESQPLFPAKMVSRLMQWTASTYDEYKVLP
YTRPVVEAGLAQESDLYFSALIERGTAKLRVAVLLSPSFPSPAPILSLCLSWNGERSSQT
DDNIRAIESEVCVHAGELMGPKPGYELLTNQLARICACLDVYLETWSPDVSVEGPREFPR
DKMCLRLSRGPNRLKPFKYNPRQGFFTHR
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaagaaacgcaaggggaaggctcctcggggaggcggcggcggcggcgactcc
acggcgagcggcggcggcggcgtcggcgtcgctgttggcgccgacagagacatgaagaag
ccgcgggtcgagaccgagcaggaggtgacgcgtgtgtacagcgatgaggcggacgtggag
acgcgggagcccgaggccgacgagctcctctacgcggacacgtgccgcgagctgcagcgc
ctcatgggcgaggtggacgagctcaagtcccagggcatgcggcataatgcccctgagata
gaggagcgtaaaacgcaggtttgcatccacttcatgacgctgaagaagctgaaccgactg
gcgcacattcggtgcaagaaaggccgagatgctacttacgagaacaagcagaaggtggac
gcgctgcatctgcagctgcagaacctgcgctacgaggtcatgcatctgcagaaggagatc
accaagtgcctcgagttcaagtccaagcacgaagagatcgagcttgtgtcggtggaggaa
ttctaccgtgatgcgccccctgagatctccaaggaggagatcacgaggaaggagccgcac
ctgcagacgctggcacggctcgactgggagctggagcagcggaagaggctgacggaacag
tactcggaatcgattggcagcaaagacaagatagccaaggatatcgaggtgaagagggag
catctgaacaacctctacccacagctcaatgctgtcctgcaggccacggtgcccttgcag
gagtgcctggccatgcccttcgaccagacgcacaagcaggcggatgtggcgcgacacctt
cccgcacctctctacgtactctttgtgcaggccagcgcctatgctcaggcgtgcgcaaca
cggctcccaacgggctcagagcccccggggaaggacaagcgcctgtgtgtgagcgtggag
ggagatgttgacgaggccaaagctcttgccaagcagacggaggagtccccagacgatgaa
agcgactccgaccaggaagaggaggcgccacagacgaagcggcgccgtgcgacgctgggc
gtgaagctggaggacaagcgcaagcagctgctgcgcaggcacccgctctgcgtggctctg
gacatctcctgcaaggccaacaagagcacgctgcacctgcagttccgctacctcccggcg
ctgcacgtggtgacggtgaaggcgcgcgtcggggcgagcgagcagccctcgtccatcagc
ggaggaaacgatgtcccttgccgtacgtcaggggagcaaactcaccgaggcgcaaacacg
gcgccccagcggagcagagacgcaaagcacacacagcccaagcagagcaaaggggacctc
ttgactccggacagcctgctgacgtgcctgtacccgggcgaccacggcaacgacagcccc
aaccctgccaaccgcttccacctgcagcgactggggatggagtccctgggcagctacgtg
caggaggtggggcgcccgtacgtgtgggtgcagtggctggcaggactccacttccctgct
cagcccaccgagcagagcgtgtcggcgcagagcgtgctgagtgccagccacatggagacg
acggtgaggcttctgcgcatgcgcctgctgggccgcctcgccctgcagcggcagttcgct
gccctggaacactgcatcttgccagtgtcggccgagagccagccactcttccctgccaag
atggtatcacgcctcatgcagtggaccgcctccacctatgacgagtacaaggtgctgccg
tacacccgccccgttgtggaggccggcctggcccaggagagtgacctctacttcagcgct
ctcatcgagcgcggcaccgccaagctgcgcgttgcggtgctgctcagcccgagcttcccg
agcccggcgcccatcctcagcctctgcctcagctggaatggggagaggagcagccagaca
gacgacaacatccgtgccatcgagagcgaggtgtgcgtgcatgcgggcgagctgatgggc
ccgaagccaggctacgagctgctgacgaaccagctggcgcgcatctgcgcctgcctggac
gtgtacttggagacgtggagccctgatgtcagcgtggagggccctcgcgagttccccagg
gacaagatgtgcctgcgtctcagccgagggcccaaccgcctcaagcccttcaagtacaac
cctcggcaaggcttcttcacgcaccgctga
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