Petromyzon marinus (sea lamprey): 116950293
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Entry
116950293 CDS
T09614
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03030
DNA replication
pmrn03410
Base excision repair
pmrn03420
Nucleotide excision repair
pmrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116950293 (RFC5)
03410 Base excision repair
116950293 (RFC5)
03420 Nucleotide excision repair
116950293 (RFC5)
03430 Mismatch repair
116950293 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmrn03032
]
116950293 (RFC5)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116950293 (RFC5)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116950293 (RFC5)
DNA replication proteins [BR:
pmrn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116950293 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
116950293 (RFC5)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116950293 (RFC5)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116950293 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
116950293 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_24
AAA_22
AAA_assoc_2
AAA_11
Rad17
AAA_14
RuvB_N
AAA_16
DEAD
ResIII
ATPase_2
DUF815
AAA_2
AAA_5
AAA_19
AAA_7
AAA_30
AAA_3
Mg_chelatase
PhoH
Thioredoxin_6
AAA_28
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
116950293
NCBI-ProteinID:
XP_032823892
UniProt:
A0AAJ7TWF9
LinkDB
All DBs
Position
38:complement(11738352..11759878)
Genome browser
AA seq
322 aa
AA seq
DB search
MMTVVEKYRPRVLDELISHKDILTTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLY
GEKEAASMVLELNASDDRGIDVVRGPILSFASTRTIFKKGYKLVILDEADAMTQDAQNAL
RRVMEKFTENTRFCLICNYLSRIIPALQSRCTRFRFGPLSSDLMVPRLLHVIAEEQVDVT
DDGMNALVTLSNGDMRRALNMLQSTNMAYGRVTEHNVYTCTGQPLKSDIANIVDWMLNSD
FSGAYRQIMELKTLKGLALQDILTEVHTFVHRVDFPMSVRIHLLTKMAEVEYRLASGTNE
KIQLSSLIAAFQVARDMVAAEA
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgtggtggaaaagtatcgaccaagagttcttgacgagctcatctcacacaag
gatattctgactacgatccagaagttcatcagtgaggaccgattgccccacttgctgttc
tatggccccccgggcaccggcaagacgtccaccatcctggcatgcgcacggcaactgtac
ggggagaaagaggctgcctcaatggtgcttgagctgaatgcgtcggacgaccgaggcatc
gatgttgtgcgaggccccatcctcagcttcgccagcacgcgcaccatcttcaagaagggc
tacaagctggtgattttggacgaggcagacgccatgactcaggatgcccagaacgccctg
cgacgagtgatggagaagttcacggagaacacgcgcttctgcctcatatgcaactacctg
tcgcgcatcatccccgcactacagtcgcgctgcacacgcttccgctttggcccgctttcg
tccgacctcatggtcccacgcctcctgcacgttattgctgaggagcaggtggacgtaacg
gacgatgggatgaacgcgctcgtcacgctgtcgaacggggacatgcggcgtgcgctcaac
atgctgcagagcaccaacatggcatacggccgcgtgacggagcacaacgtgtacacgtgc
acggggcagccactcaagtcggacatcgccaacattgtggactggatgctcaacagcgac
ttcagcggtgcctacagacagatcatggaattgaagactctcaagggtctggcgctgcag
gacatcctgacagaggtgcacaccttcgtccacagggttgacttccccatgtcggtgagg
attcatctcctcaccaagatggcagaagtcgagtaccgcctggcctcgggcaccaacgag
aagatccagctgagctccctcattgctgcgttccaggtggcgcgggacatggtggcggcc
gaagcatga
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integrated database retrieval system
