Petromyzon marinus (sea lamprey): 116950478
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Entry
116950478 CDS
T09614
Symbol
CFAP47
Name
(RefSeq) cilia- and flagella-associated protein 47 isoform X1
KO
K25552
cilia- and flagella-associated protein 47
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pmrn03037
]
116950478 (CFAP47)
Cilium and associated proteins [BR:
pmrn03037
]
Motile cilia and associated proteins
Sperm associated proteins
116950478 (CFAP47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_CFAP65_4th
HYDIN_VesB_CFA65-like_Ig
Cep192_D4
ASH
Cep192_D3
CFAP47
TMEM131_like_N
Cep192_D6
PapD-like
Ig_CFAP65
CH
CAMSAP_CH
Ig_Dlec1_1
Motif
Other DBs
NCBI-GeneID:
116950478
NCBI-ProteinID:
XP_032824158
UniProt:
A0AAJ7TU44
LinkDB
All DBs
Position
39:5816993..5901457
Genome browser
AA seq
3228 aa
AA seq
DB search
MAESVLLVSPRVVEFADATPGRRLSAVVTARNTGDRSRRVRVCAPRSGAFKLHGVPLQEQ
HLAPGLSIAATVEFYMEQKGSVRDHLLLLVDGDSIEVPLIGFSPACSLDVQKEVDFGCVL
ANGAMLQQNITVVNHGSAPGEFHFSCEGEVMFSFRPSSGMVPPKSMQPVQVEFCASSPGD
VLQTALVRLDGREEAQEVQLRAEVVQPRLEVLSPSGDEQLRCLKLGAAYYNTSRQGQAIL
RNPGPEPLSWVAVLQEDTAGEEKSVNVLDASAPRHELQGVLRCFPSQGTLPPHEEIPLTL
TFSPRHTRDRTGWNHMDRPPPGHNYALFIHFEIVGSQNSSVIPPGQPRQPRGTGLVGVEL
AVTATAQPLLLSTVPSPLVFDLGACAPGARVEMLCTLRNESTVLPLHYRIPRVAHIQATP
AEGKIPPGQTQDVVLSFRPKQVGELRMRPTLELLGPVLPRSGGGTVGLSLKPFHRIPMQM
SGQGIPVTRRPNPTFNPGLTPLISNATGMLVEVRAAEASSYTASAQTALLSSAKTRIHQH
MRSRSADDGVALLSFPNDRAASVRPSDRKQPYRTIFTGEGRHTYIDPDFAYTDEEEQQRQ
EHKERYSHFIQQLRNQRLSKLQTRENNGNENSADLGMEPASGLSPPSPKPPARNVIAHGR
RVTKPGQRHSRVLTTRDLTATEVKASLRPHVEGLNAVPATLQEKDDCSMILSPQQLLKVI
IGPMPLDFGEVCVGSAVSRRLHVVNGLEHHVLVCLSTECPELQQGSPLSQVVPPLSRASL
PLLFQPSQLGRFQRSFWYSVNEHHSSHLVVLAEVVPLELELRPAVLKVAAVEGLASELGV
RSSVRLCNPRNLRASFSWEPVPSELGVPFSLRPAAGCVEENSELECEVVWHPSCRATDQA
EFVVNVQHGNSLRLKCLAQIGAVSVQCVDQRVVLGSVPLNITTVRSVFLRNTGQQHAYFQ
VLDPSPLPGLSILPEEGVVAVGGETELAVCLTPGTIVTFDTKVQVAFRGGKTQELRITGS
VEPPALEMNVKALRFDGVYVGSSRSLPFTLRNPTRCCVRSEIDLSAHPDFKLALNRNQRA
ACLKEDIPGLYSLEVDAGQTVGCSLNFTPTEVAAYDFRLPMHLNGLVAPSPAPSTVPPSP
STQHIRTPRPASCDPITPASKVHAIALRPLLLISESSLEFYLPSNYIGLGVSPESLTIQS
VQIQNLSNTSLHWKFDLRTLSEDSFKVFQSEGSLGLKENASITFCFCPRSAGTFHARIPL
LVSGEGVRNESEPYRVISLRGILPTPTLAFNPDSITLGPAPLDTEVAAEFCIVSRHNTSW
VTLEVDLPEVEGELGEKLTPFSISFPSGRKLGPSEYGQPSSPLPCRLAFQCHKPLSLSTT
IVFHDSLGRRFELPVTVCADNCLLTLYPFLALHRNNHHVVLEEVEGGERAAMLRSCVSAQ
QDSNVSSSSSHFSCPTSTIYNSLTDLTSVSVANSEGQEPAAPPFAESQCIDDISFYRRAQ
AAVTRWFSRFGWPGGTNHLSGPQQLRSAIGKILVSSSERKRGGVGGGSKGLADAPPPGTG
PRSTYGSPRPRSRQQSSLPPSAPARGAAPATPWVLRKGGRTLYDMLAHLCGRALPGVPVS
QSVPGDVADRAVQLHWQHATLLEFLRGQGACLPNVKPEHLLHMDDYNCWHSLLKENEKCG
IENEETECVTTATELAESDFENVSERAWTDILLQIFKVFVLSRVTTEAVSKALPTENRTM
ARPPLLAVAPLSSNFYSSSERLLLSWLNHHYHASRMLICSPDDPPSARWVVNFDYDLMDG
LVLAAVLASYCPYLIPSHLSRLQPHPCSPEQYLHNALVLVSALHVTGLALDIQAIEITDP
NPVQMLIVCVELFRALPHYSPHRSVNFPAALHAPVTRQIRVSNPSSKPLQYRAVIIGEDA
SQFRFPKGENYILPAKGGLDVPVEFRGRFLHDAAAVLLMLPRAGAGVDMLAFTLNARLAT
LAPEGVSKCAGPCYHQQTMTLSVTNPFTEPGRFRVVVLESSSPLQPSQLSPLSLPCHQKE
TRGERLRMSKSEESHGVGLQSRGTPTRGRNYVCSSLDSPEWSSAMTLPWFLCPVEFVQLD
VGETASLEVTFLPFGLGPRHCYLLLLNAQIGDVVYMIEGCSSLPTALPPMVQHDTPNVRV
GSTQAGQGSSPVLYVRCAESQEVTVALRVPWVNTQRDEALALAARLRMSELELERRTLTK
SLRSAGVKAAFARLALQTDNSEKPFAGSGSQSKTFHVEASLSQHFTVPHQLCMPAPPSGK
EDCDTVALPVRFSPPSPGRYPCSVVLRSSDDVRVYRLEGLSAPEASHTTLTFCTAAHNAL
SQDIPIHNPTQQDWLLTAHVEGKGFYGSQYLQVLAGQTAPYSLLFRPGHEGETVGRLVLY
NEQDSSEHTFVLNGKGERPSPLAHVVIHAQAGQTACREISVPNYTPHRLRYSVESDVPFV
SGAPTLNVPAGESRPYLLTITPWKRGTFYGLVNFHAKEKAAKQLETTEQAAADQRQLFTE
AEQELDVADGLVSRVWFTLEIKSAPPPPQRTVTVDAAMQGAVEVSVPVRNPCDTLLTLDV
ALEGVGLSGDARIVLAPLESRVYRLLYQPSRIGASRGSVIFQSEVCGEFWFDLELIANPS
DPVTLPELQCQLGKWTSQLLRLTNTTSENLELEPVVSNPKNFTLQIPANRLVDLPAKSER
EISLQFRPSALGSADHHAAITFTSSQTGAWVFFASGVGLPPEPSEPVSVMALLGSQATLI
LPFSNPTEFAVTAQISLTDEESVVQLTSSSVLTQSIKAESPFSLLLKRTSDVSVPPRGLL
SIPLSFSPESTRLRRALCVVSLSQESGGTWQTNGLDLPASNLTSVHIEDGGDVVTEIRWV
FPIHGIPVINSPTSAPATFRCAARSRLEESVEVVLSSVLPESRDSTPYTPRHSARSPPPP
PPQQQQELQPQLLQPPTCESPRSRSPRQGSASSASRQTELRHWLDFGFGSEDATPESSGQ
GALESAVAVSLLGHDRDPHLGIVRLTFRVVFAPQAPLSAAASLLVSGPSGGIYRFPLRFE
ATEALPDDVVTIHAHGLHQASTVVFRLTSKSRHAAAFSASFTRDSDPEFSVWPPSGELPP
EGSEGSPIAVSFCPRSYGKPHRATLLVKAGETTWMYEIHGLPSVYFPPSAHSSLHSIFSG
KSKSRARPAALASLKQPSHRNFVSENLNLQSTGPSSPIKGAPLLASNK
NT seq
9687 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtcggtgctgctggtgtcacctcgcgtggtggagttcgcggacgccaccccc
ggccgccgcctctcggccgtggtgacggcgaggaacacgggggacaggagccgccgggtt
cgcgtgtgcgcccctcgctccggggcatttaagctgcacggagttcctctgcaagaacaa
catttggctcctggtctgtctattgcggccaccgtagagttctacatggagcagaaggga
tctgtacgcgatcatctcctgctgctggttgatggagactcaattgaggtcccactcatt
gggttttctccagcttgtagcttagatgtacagaaagaagtggactttgggtgtgttctg
gccaatggtgccatgctgcagcagaacatcacagtggtcaaccatggttctgctccaggc
gaattccatttcagctgtgaaggggaagttatgtttagtttccggccaagtagtggcatg
gtacccccaaaaagcatgcagcccgtgcaggtggagttctgtgcaagcagtccaggggac
gtccttcaaaccgcactggtacggctggatggccgtgaggaagcacaggaggtacagctg
agggcagaggtggtgcagccgcgcttggaggttctgtctccctctggggacgagcagctg
cgatgcttgaaactgggggcggcctattacaacacaagcaggcagggccaggctatcctt
cgcaaccctgggcccgagcccctcagctgggtggcagtactgcaggaggacacggccgga
gaagaaaagagtgtgaatgtgttagatgcttcagctcccaggcacgagctacagggagtg
ctgcgttgcttcccaagtcaggggactctgcctccgcacgaggaaatacctctcacgctc
accttcagtccacgccacactcgagatcgcactggctggaaccacatggatcgaccgcct
ccaggacataactatgctctctttatccactttgagatcgtcggcagccaaaacagctct
gtcattcctccagggcaaccccggcagccacgtggtacaggcttggtgggagtggagctg
gccgtgacggccacggctcagcctctgctactgagcacggttccgtctcccctggtgttc
gacctcggggcgtgtgcaccgggcgcacgcgtagagatgctctgcaccctacgcaacgag
tcgaccgtgttgccgctgcactaccgcatccctcgagttgcccacatccaggccactccg
gccgagggcaagataccgcctggccagacacaggacgtggtgctgtcattccgacccaag
caagtcggggagctgagaatgcggcccacactcgagctgttgggccctgtgctgccccga
agtggcggtggcaccgtggggctatcgttgaaaccctttcaccggattccgatgcagatg
agtggccagggcatcccggtcactcgccgtcccaaccccacctttaacccaggcctcact
ccgctcatctccaacgcgacgggcatgcttgtagaagtcagagcggctgaggcttccagt
tacacggcttcggcacaaacagcgctgctcagctcggccaagacacgcatccaccagcac
atgcgcagccgcagcgccgacgacggggtggccctcctctccttccccaacgaccgcgcg
gccagcgtgcggcccagtgacaggaagcagccctaccgaacgatcttcacaggcgagggc
cggcacacgtacatcgacccggattttgcgtacacagacgaagaggagcagcaaaggcag
gagcacaaggaacgctacagccacttcatccagcagctgagaaaccagcgcctatctaag
ctgcaaaccagagaaaacaatgggaatgaaaactctgcagacttgggcatggagccggct
tctggcctgtctcctcccagccccaaacccccagcaagaaatgtaatcgcgcatggaagg
agagtcaccaagccaggccagaggcacagccgggtgcttaccacacgagacctgacagcc
accgaagtgaaggcgtctcttcgtcctcatgtggagggtctgaatgctgtgccagctaca
ctgcaagagaaggatgactgcagcatgattttgtctccccagcaactccttaaagtgatc
ataggcccaatgccgctggattttggagaggtgtgtgtcggctcggccgtaagcaggagg
ctgcacgtggtcaatgggctggagcaccacgtgctggtgtgcctgtccaccgagtgcccc
gagctgcagcagggcagccccttgtcacaagtggtgcctcccttgtcccgcgcctccctg
cctcttctcttccagcccagccaacttggcaggtttcagaggtcgttttggtacagcgtg
aacgagcaccactcgtcgcacctcgtggtgctggcagaggtggtgcccttggagctggag
ctgcgtcccgccgtgctgaaggtggcggcagttgagggcctggcctccgagctgggtgtc
cgctcatcggtgcgactgtgtaacccgcgcaacctgcgagcctccttctcctgggagcct
gtgcccagcgaactcggcgtgcccttctccctgcggcccgctgctggctgcgtggaggag
aacagcgagctggagtgtgaggtggtgtggcacccttcgtgcagggccaccgatcaggca
gagttcgttgtaaacgtacagcacggaaactcccttcgactcaagtgtctggcacagatt
ggcgcggtgagcgtgcagtgtgtggaccagcgggtggtgcttggatctgtgccgctgaac
atcacaactgtgcggagcgtatttttacgcaacacagggcaacagcatgcctactttcag
gttctagaccccagcccgttgcctgggctgtccatcttgccagaggaaggggtggtggcc
gtgggtggagagacggagttggctgtctgtctcactcccggcactattgtcacatttgac
accaaagttcaggtggcatttagaggaggtaaaacccaggagctgaggatcacgggttct
gtggaacccccagccctggaaatgaacgttaaagcgctgcggtttgacggggtctacgtc
ggttcaagccgctctctcccgttcacactgagaaacccaactcgatgttgtgtgcggtcg
gaaatcgacctatcagctcacccggactttaaactcgcactcaaccgcaatcagcgtgca
gcgtgtctgaaagaagatattccagggctatactcacttgaagtcgacgctggacagact
gttggctgctctctgaacttcacaccaacagaggtggcagcttatgacttccgcctcccc
atgcatctgaacggcttggtggctccctcgcccgcaccaagcaccgtgccccccagcccc
tccacccagcacatccgcaccccccgccctgcatcatgcgatcccatcaccccggcaagc
aaggtccatgctattgctctgcggccactgctgctgatatctgagagcagcctggagttt
tatttgccatcgaactacatcgggcttggcgtgtctcccgagtctcttaccattcagagc
gtacagatccagaaccttagcaacacatctctgcactggaagtttgacctgaggacactc
agtgaggattcgtttaaggtttttcagagtgaaggctccctgggtctgaaggaaaatgcc
tccataaccttctgcttctgtccaagatcagctggcacgttccacgcccgcatccctctg
cttgtatccggcgagggcgtgaggaacgaaagcgagccataccgtgtcatctcgctgaga
ggcatcctccccaccccgaccctcgcgtttaacccggactccatcactctgggacccgcg
cctctggacacggaggtggcggctgagttttgcatagtcagcagacataataccagttgg
gttacgctggaggtggatctgcccgaggtggaaggagagcttggggagaagttgactccc
ttctccataagcttcccctctggacgaaagttgggcccctctgagtacgggcagccaagt
tctccgttgccctgccgcctggccttccagtgccacaagcccctcagcttgtctaccacc
attgtgttccacgactcgttgggaagaaggtttgagcttccagtaacggtatgtgctgac
aactgtctactgacactctacccattcctggcccttcatcgcaacaatcatcacgtggtg
ctggaagaagtggagggaggggagcgggcagccatgctgaggagctgcgtgtctgctcag
caagactcgaatgtctcctcatccagctcccacttctcctgccccaccagcaccatctac
aactcactgacagacctgacgtccgtcagcgtggccaacagcgagggtcaggagccagca
gctcctccctttgcggagtctcagtgcatcgatgatatctccttttaccggagggcccag
gctgccgtgacccgctggttcagccgcttcgggtggcctggcggaaccaaccacctctct
ggaccacagcaattgcgcagcgccatcggaaaaatattagtctcctcgtctgagcgcaaa
agaggcggtgtcggtggtggctccaagggcctcgccgacgccccgccgccaggcaccggg
ccccgcagcacctacggctcgcctcggccccgcagtcgccagcagagctccctgccgccc
tccgcaccagcgaggggcgccgccccggccacgccgtgggtgctgcgtaagggcggccgt
acgctctacgacatgctggcgcacctgtgtgggcgggcactgcccggcgtgcccgtgagc
cagtcggtgccaggggacgtcgcggacagggccgtgcagctgcactggcagcatgcgacg
ctgctcgagttcctaaggggtcagggagcgtgtttgccaaatgtgaaacctgagcatcta
ctccacatggatgactacaactgctggcacagtctgctgaaggaaaacgagaaatgtgga
attgaaaatgaagaaaccgagtgcgttaccacggcaacagagttggcggagagcgacttt
gagaatgtgagcgagcgtgcatggaccgacattctcctgcagatttttaaggtgtttgtg
ctgtcgcgtgtaacgactgaagcggtcagcaaagcactaccgacagaaaaccgtacaatg
gctcggccaccgctcctggcagtggcgcctttgagtagcaacttttattcttcaagcgag
aggctgctcttgtcctggctaaaccaccactaccatgcatcgcgcatgctcatctgctct
ccagatgaccccccgtctgcacggtgggtggtgaactttgactacgacttgatggacggg
ctggtgctcgcagcggtgcttgcctcctactgcccctatctgataccgagccacttgagc
cgcctgcagcctcatccctgcagccctgagcagtacctgcacaatgccctggtgctcgtg
tctgccctgcacgtcacgggcctggcactcgacatacaggccattgagattacggaccca
aaccccgtgcagatgctcattgtgtgcgtcgagctgttcagggcgctgcctcactactcc
ccacaccgctctgtgaactttccggcagcactgcatgccccagtcacccggcagataagg
gtgtccaacccaagctccaagcctctccagtaccgcgccgtgatcatcggagaagatgca
tcgcaattcagattccccaaaggagaaaactacatcctccctgccaagggaggcctggat
gtgcctgtggaattccgtggccgcttcctgcacgatgcagcagctgtgttgctgatgctg
ccccgggctggtgcgggcgtggacatgctggcgttcacactgaacgctcgccttgccacc
ctggcacctgagggagtgtccaagtgtgcggggccatgttaccaccagcagacgatgacg
ctgagcgttaccaacccattcacggagcctggaaggttcagggtcgtggtcctcgaatcc
agcagcccgctgcagccctctcagctctcaccgctatccttgccgtgccaccagaaggag
actcgtggcgaacgcctacggatgagcaagtctgaagagagccatggtgtgggtctgcag
agtcgtggaacaccaacaagagggagaaactacgtttgttcgtccttggattcccccgag
tggtcaagcgccatgacattgccgtggttcctgtgcccggtggaatttgttcagctggat
gtgggagagacggcgagcctggaggtcacctttctaccatttggcctcggcccaagacac
tgctaccttctgcttctcaatgcacagattggggatgttgtgtacatgatcgaaggctgc
tcgagtctgcccactgctctgcctcccatggttcagcacgacactcccaatgtccgtgtc
ggcagcacacaggcgggtcaagggagcagccctgtgctgtacgtgcggtgtgcggagagc
caagaggtgaccgtggccctgcgggtgccgtgggtgaacacgcaaagggacgaggccctg
gccctggcggcgaggctgcgcatgtcggagctcgagctggagcgccgcaccctcaccaag
agcctgcggagcgccggcgtcaaggcggcgttcgccaggctggcgctgcagactgacaac
tctgagaagcccttcgctggttcaggatcacaaagcaagacgttccatgtagaagcaagc
ctgtcccaacacttcaccgttccacatcagttgtgcatgcctgcacctcccagtggaaaa
gaagactgcgacacggtggctctgccggtgaggttctccccacccagcccgggacgctac
ccctgcagcgtggtgctgcgctcctccgatgacgttcgcgtgtatcggctggaaggcctc
tcggcccccgaggcctctcacaccaccctgaccttctgcaccgccgctcacaacgccctc
agccaagacatacccatccacaaccctactcagcaggactggttgctcactgcccatgtg
gagggcaagggcttttatggatcccagtacctgcaggtgctggccggacagactgcaccc
tactcgctgctcttcaggcctggccacgagggagagaccgtgggtcggttggtgctgtac
aacgagcaagacagctcggagcacacgttcgtgctgaatggcaaaggagagaggccgtct
ccacttgcgcatgtggtcatccacgcgcaggccgggcagactgcatgcagggagatctcc
gtgcccaactacaccccccaccggctacgctactcggtggagtccgatgttccgtttgtg
agcggcgcccccacactgaacgtgccagccggggagagcaggccctatctcctgaccatc
actccgtggaagcgaggcaccttctacggcctagtgaacttccacgcaaaggaaaaggcg
gcgaagcagctggagacgactgagcaggcggcagccgatcagaggcagcttttcactgaa
gcggagcaagagctggacgttgctgacgggctcgtcagtcgggtgtggttcacgctggaa
atcaagagcgcgcctccacctcctcagcgaacggtcacagtagatgcagcgatgcagggc
gcagtggaggtgagcgtgccggtgaggaacccgtgcgacacactgctcacgctggacgtg
gcgctggagggcgtgggactgagcggggacgcgcgcatcgtgctcgcacctctggaatcg
cgagtctaccgtctgctttaccagcctagccgcatcggggcctctcgcggaagcgtcata
ttccagtcagaggtgtgtggagagttttggttcgatctggagctgatcgcaaatccctca
gaccctgtcactttgcccgagctacaatgccaacttggaaagtggacgagtcagctgctg
cgtttgacgaacaccacatcggagaatctggagcttgagccggtagtgagcaaccccaaa
aacttcaccctgcagatcccagcaaacagactggttgacctgcccgctaagtctgagcga
gagatctcccttcagttcagaccatctgctctggggtccgctgatcatcatgccgctata
accttcacctcctcacagacgggcgcgtgggtcttctttgcgagtggagtgggactgcca
ccagagccctcggagcccgtgagcgtgatggccctgctgggctcgcaggcgacactcatc
ctgcccttcagcaatcccaccgagtttgcggtcaccgctcaaatctcactcacggacgag
gagagcgtggtgcagttgaccagctcctctgtgctgactcagagcattaaggcagagtcc
ccgttctccctgctgctcaagcgaacgagcgatgtgtccgtgccaccacggggcctcctg
tccatcccgctgagcttctcaccggaatccacacgtctccgccgagctctctgtgtcgtc
tcgctcagccaggagtccggggggacatggcaaaccaatgggctcgaccttcccgcgtcc
aacctcaccagtgtgcacattgaggacggtggcgacgtcgtcacggaaatccgctgggtg
tttccaattcacggcataccggtgataaactcgccaacaagtgctcctgccacgtttagg
tgtgcggcgaggagtcggctggaggagtctgtcgaggtggtgctctccagtgtcctcccg
gagagccgcgacagcaccccatacactcccaggcactcggctcgctcaccaccaccacca
ccaccacaacaacaacaagagctgcagccgcaactgctgcagccccccacgtgtgagagc
cctcgctcaaggtctcccaggcagggcagcgccagttcagcgagcagacaaacagaactc
cgccactggctggactttggatttgggagtgaagatgcaacgccagagtcttctgggcag
ggggcgctggagagcgccgtggccgtgagtctgctgggtcacgaccgcgacccccacttg
ggcatcgtgcgactcaccttcagagtcgtcttcgctccccaggctccactcagcgcagcg
gcctcgctgctggtgagcggcccctcggggggcatctaccgcttccctctccgcttcgag
gccacggaggccctgccggacgacgttgtcacgatccacgcgcacggcctgcaccaggca
tctacggtggttttccgtctcaccagcaagtcaaggcacgcggccgccttctcggcaagc
ttcacgcgagacagcgaccccgagttcagcgtgtggcccccgagcggggagctgcctccc
gagggcagcgagggaagtcccatcgcggtctccttctgtccccggagctacggcaagccg
caccgcgccacgctgctcgtcaaggcgggcgagaccacatggatgtacgagattcacggc
ttaccctcagtgtattttcctccctccgctcactcctcactccattccattttctcggga
aagtctaagtccagagcgcgcccggcagcgctggccagcctcaagcagccaagccatcgt
aactttgtaagcgagaacctgaatctacagagcacgggtccctcctcgcccatcaagggg
gcaccgctactggcctccaacaaatag
DBGET
integrated database retrieval system
