KEGG   Petromyzon marinus (sea lamprey): 116951499
Entry
116951499         CDS       T09614                                 
Name
(RefSeq) collagen alpha-1(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn04510  Focal adhesion
pmrn04512  ECM-receptor interaction
pmrn04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116951499
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116951499
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116951499
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:pmrn00535]
    116951499
Proteoglycans [BR:pmrn00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   116951499
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 116951499
NCBI-ProteinID: XP_032826068
UniProt: A0AAJ7U0H7
LinkDB
Position
3:complement(2583767..2631025)
AA seq 688 aa
MGFFNVLLLAHVLVYFCSGQPPLARTPSPGQGPVGTRGPAGSPGSPGRDGNDGLRGLPGA
PGQTGEKGNPGPSGVVGKSGPPGIPGSDGIVGPSGDIGPSGSLGQKGNQGPPGPPGSSGQ
LLGGPPGIPGKKGPSGGVGLLGAPGNSGPQGLPGPPGPPGLEGLPGIMSADGNAEIECVA
SCHPSLPGPSGVMGPKGQKGERGELGVPGKQGHKGEEGLQGETGPPGDSGSQGLPGLQGV
TGMVGAKGDTGLRGKDGKQGVVGIAGPSGDEGPRGITGKPGIKGDTGLPGPRGKIGYPGP
KGDLGLGGVNGRDGITGLPGKKGDPGKPGSVGEVGIPGVPGSPGSSGAKGEQGGKGEQGI
SGAVGPAGPQGKSGDKGPPGKGGLMGSDGPPGVAGKRGMRGHVGVHGIVGSKGNPGFQGL
PGTSGLPGIKGEKGLTGIVGEKGAAGIPGIDGYEGIIGDVGPQGESGPKGDTGPAGKTGH
RGGEGPRGEVGKEGALGLPGPLGQQGETGLPGSTGKEGEPGKEATNEHIQDVCMRVMQEQ
LAQLASGIPRRDPGAMGVMGPPGLPGPQGLPGPNGVMGHEGLRGLPGLEGSQGPIGNKGA
RGIHGEKGDQGDAGYGPKGLLGNIGLTGREGSPSYGRDGLDGPKGLPGPSGRQGRPGSPG
PPGSPGYCDPACHGPIAFQGPASDVKGP
NT seq 2067 nt   +upstreamnt  +downstreamnt
atggggttttttaatgttttactattagcgcacgtcttggtatacttctgctctggacag
ccacctctggcacggacaccgagcccaggccagggtcctgtgggcacccgggggcctgca
gggtccccgggatctcctggccgtgatggaaacgatggtctgagaggacttcctggggca
cctggacaaactggagagaaaggaaaccctggcccctcgggagtcgtgggaaaatctggg
ccacctggcattcccggtagcgacggaattgtaggtccttctggtgacattggaccttca
gggagcctgggacaaaagggaaaccaaggaccgccgggtccccctgggtcatcgggacaa
ctactgggcggtcccccgggcatcccagggaaaaaaggaccctcaggaggagttggtctt
cttggagctcccgggaacagtgggcctcaaggcctgcccggaccaccagggccacctggc
ctggagggtcttcctggaatcatgagtgcagatggcaatgcagagattgagtgcgtagct
tcgtgtcacccttcacttccgggtccaagtggcgtcatgggtcccaagggtcaaaaaggt
gaaaggggagagttgggcgtgccaggcaagcaaggtcacaagggagaagaaggactgcag
ggagaaacgggcccacctggggactcgggcagccaggggcttcctggccttcaaggagtg
actggtatggtgggcgctaaaggcgacacaggtcttcgaggaaaggatggaaaacaaggt
gtcgtgggcatcgctggaccttcgggcgatgaagggcccaggggtattactggaaagcct
ggaattaaaggagacacgggtctacccggtcctcggggaaagattgggtatccaggacca
aaaggagacctgggccttggaggggtcaatggccgtgatgggattacaggactccccggc
aaaaagggtgacccaggcaagccaggaagcgttggagaggttgggatcccgggcgttccg
ggctcacccggctcttctggagcaaaaggggaacaaggcggaaagggcgaacaaggaata
tcaggagctgtggggccagctggcccacaagggaaatcgggtgacaaaggacctcccgga
aaaggtggactcatgggatcagatggaccaccgggtgttgcagggaagcgtggtatgaga
ggtcatgtcggagtacatggaatcgtgggttcaaaaggtaatcccggcttccaaggtctt
cccgggacatcaggactgcctggaattaaaggagaaaagggcttaacgggaatagttgga
gaaaagggagccgctggtattccagggattgatggttatgaaggaatcatcggtgatgtg
gggcctcaaggtgaatcaggccccaaaggagatacgggacctgcgggaaaaactgggcac
cgcggcggcgagggcccccgtggagaagtgggcaaggagggggccctcgggctgccgggc
ccgctgggccagcagggcgagacggggctgccagggagcaccgggaaggagggcgagcct
ggaaaggaggcaacaaatgaacacatacaggacgtgtgcatgagggtgatgcaagaacaa
cttgcccagctggcttctggcatacctcgccgagatcccggagccatgggggttatgggc
cctcctgggctaccggggccccaaggactaccaggccccaacggagtcatgggccacgaa
ggtctccgtggcctgcctggccttgagggctctcagggccccattggaaacaaaggagcc
agaggaattcatggagaaaagggagaccaaggtgatgcaggttatgggcctaaaggtctc
cttggcaatataggactaacaggcagagaaggctctcccagctatggccgcgatggtttg
gatggccccaagggcctccctggaccctctggccgacagggacgacctggttctccaggg
cctccaggatctccaggctactgtgacccagcctgccatggacccattgctttccaaggg
ccggcttctgatgtaaaaggaccatga

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