Petromyzon marinus (sea lamprey): 116951845
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Entry
116951845 CDS
T09614
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn02010
ABC transporters
pmrn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116951845
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116951845
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pmrn02000
]
116951845
Transporters [BR:
pmrn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116951845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
116951845
NCBI-ProteinID:
XP_032826513
UniProt:
A0AAJ7TYI4
LinkDB
All DBs
Position
44:9241097..9325752
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AA seq
2269 aa
AA seq
DB search
MGFWTQLYLLLWKNFTLLRRQKLRLLMEVLWPLMIFFILISVRSSYPPHEQHECHFPNKA
MPSAGLVPWLQSLVCNMNNPCFRHATPGEAPGTVSNFENSLLSRLFEELQEGFVNLTQKG
SVEELRGYERLLSLIKDRDVRRILPVVRVRDMLTDEEGLSFFARQENLFSEPVIAQLLEA
HIHPGQVLANLTAAGMRAGVCDPELLSHALVLPHPAVQPEAQRQLCNLTDMQTRGLLTAF
VARLDRSKLMQVMMPGVDPKTLDVVGTMVGNLQTVTRLMKETFEELQDDSDGGSLAPNST
MGLMRGFRSVSRLVCGYPEEGLITIRSMNPYEENNFKSFLSSNMSEEKAYVYDNSTTAYC
NNMIQRMESNLATRFMWNTVKPLFMGKILFSPNTPAVQRIVREANDTFVKMGMLGNVFEA
WRAVKPQLWEFMQNSQEINGLKDLLRTPEVASVLDAALNGTGWSVDSLLSFLSAQVGGIS
GIATHLLQQNWQVLLNDTDAVLETATQFLECMNLDKFEGQPDEEQLVSRALELLDENEFW
AGIVFMDLDPNSEELPAHVRYKIRMDIDSVQRTNKIKDRYWDPGPRADPFDDLRYIWGGF
AYLQDSVEQGIIRAQTNGSLSVGVYVQQMPYPCYVDDIFLRIMNRSLPMFLTLAWMYSVA
MILKEVVHEKEARLKETMRIMGLSTSMLWLSWFISILIPLLISAMLLTVLLKLGNILYYS
DPTIVYLYLCVFAIATVMQCFLISTFFSRANLAAATGGIVYFSFYLPYVLCVAWQNQITY
SVKISTSIFSTVAFSFGSEFFSLYEEQGVGMQWENVFSSPVEGEDYTFISSIFMMLFDAF
VYGLLTVYIENVFPGQYGVPKPWYFPCTRAYWRGDTMEKELYETIAQKQPQADNIYVEDE
PGDLPVGVSIQGLVKIYNAGKKLAVDGLSLNFYQGQITSFLGHNGAGKTTTMSILTGLFP
PTAGTAYILGRDIRTDIDKIRKNLGVCPQYNVLFDRLTVEEHIWFYARLKGRSEQEAKQE
IEQMIQDVDLAHKRSDISKSLSGGMQRKLSIGIAFVGGSKVVFLDEPTAGVDPYARRGIW
NLLLKYRHGRTIILSTHHMDEADLLGDRIAIISHGRLRCCGSSLFLKNAFGAGYYLTMVK
RSGSGGSNSSCLAGLARFEADSSFTERTRSLLMQDDRHSASSSDEGFGSDESNPDSIADV
SSVTRLLQQHVPDARLIENFGQELTYLLPSHGAKDGTFALLFKELDEKLAELGVSSYGVS
DTTLEEIFLKVAEEPAANSHANNGEIPRKRRRRIRFSGCHLTTHAEPEVDMELAERNVFQ
GYRIPELWKKAELGELEKLNELDGKGTQQISGVQLILLQFKALFIKRFHHARRSRKGFVA
QIILPAVFVCLALVFSLIIPPFGKYPMLQLQPWMYGEQYTFLSNDAPENVKTNSLYDALL
NKPGFGTRCMNGESIPDAACVETKSEWVQPPMSPAMARTMQSRNWSMEDPSPECRCSGEG
RRVILPDCPEGAGGPPPMQRVQNTTDTLEDLSGRNISDYLVKTYPQAIRKSLKHKYWVNE
IRYGGLSVGKKKLSHSASPKDMDIVFTNVKRVFHIENKAVDVLYSGVKDMVSFLGPKETI
KVWFNNKGWHAIVAFMNMANNAVLRSSLPAGTDPSDYGITAYNHPLNLTKEQLSEVMLLT
TSVDVLVSICVIFAMSFVPASFVLFLIQERVSKAKHLQFVSGVNPTIYWISNFAWDMLNY
TVPATLVVLIFLCFQQQSYTSAANLPVLITLLLLYGWSITPLMYPASFIFRVPSTAYVVL
TCINLFIGINGSIATFILELFEDDQNLKRINSILKQIFLIFPHFCLGRGLMDMVKNQAMS
DAFQRFGENRFVDPFSWDMVGKNLFAMAVEGMGFFMINLLVQYRFFWKPRSHRGKLQPVS
EEDEDVARERTRLTNDEGGSDTLVIRNLTKVYNGKKKPAVDRICVGIPPGECFGLLGVNG
AGKTTTFKMLTGDTDITSGDALLNRYSILTHKREVHQNMGYCPQFDAINDLITGREHLEF
YARLRGVPEKEVSRVAAWGIRKLGLTKYADRAAGNYSGGNKRKLSTAIALVGCPPIVFLD
EPTTGMDPKARRFLWDCILSIIKEGRCVLLTSHSMEECEALCTRMSIMVNGRFQCLGSVQ
HLKNKFGDGYTVTLRVAGSPPVLPPVEEFIGSAFPGSLLKERHHNMLQYQLPSAESSLAK
IFNLLALRKEELNVEDYSVSQTTLDQVFINFAKHQSDEDHSSIIQTSVV
NT seq
6810 nt
NT seq
+upstream
nt +downstream
nt
atggggttctggacacaactctacctgctcctgtggaagaacttcaccctcctccggcga
cagaagctgcggctcttaatggaggtgttgtggccactgatgatcttcttcatcctgatc
tccgtgcggtcgtcgtaccctccccacgagcagcacgaatgccatttcccaaacaaggcg
atgccatcggcggggctggttccctggctgcagagcctcgtgtgcaacatgaacaacccg
tgcttccggcacgcgacccccggggaggctcctggcaccgtctccaacttcgaaaactcg
ctgctctcccgtctctttgaggagctgcaagagggcttcgtgaacctgacgcagaagggc
agcgtggaggagctgcgtggctacgagcggctgctcagcctcatcaaggaccgcgacgtc
cgtcgaatattgccagtggtgcgagtgcgggacatgctgacggacgaggagggcctctcc
ttcttcgctcggcaagaaaacctcttctcggagcctgtcattgcacagctgctggaggct
cacattcatccgggccaggtgctggccaacctgacggcggcggggatgcgagcgggcgtg
tgcgacccggagctgctgagccacgcactggtgctcccccacccggctgtgcagcccgaa
gcccagcgccagctgtgcaacctgaccgacatgcagacgcggggcttgctcaccgccttc
gtcgccaggcttgaccgctccaagctcatgcaggtgatgatgcctggcgtggatcccaaa
accttggacgtggtggggacaatggtgggaaacctccaaacggtcaccaggctcatgaaa
gagacctttgaggagcttcaggacgactcggacggaggttcgttggcccccaacagcacg
atggggctgatgcgcggcttccgctcggtgtcgcggcttgtgtgcggctaccccgaggag
ggcctcatcaccatccgctccatgaacccgtacgaggagaacaacttcaaatccttcctg
agcagcaacatgtccgaagagaaggcctacgtctatgacaactccacaactgcgtattgc
aacaacatgatccagaggatggaatcgaacctggccacgcgcttcatgtggaacactgtc
aagccactgttcatgggaaagatcctcttctctcccaacacgcccgcggtgcagcgcatc
gtgcgagaggccaatgacacgtttgtgaagatgggtatgctgggaaatgtgttcgaggcc
tggcgggcggtaaagcctcaactctgggagttcatgcagaacagccaggagataaacggc
ttgaaggacctgctgcggaccccggaggtggcctccgtgctggacgccgctctcaacggc
acgggctggagcgtcgacagcctcctctccttcctcagcgcgcaggtcggcggcatttcg
ggaatcgccacgcacctcctccagcagaactggcaggtcctcctcaacgacaccgacgcc
gtgctggagaccgccacccagttcctcgagtgcatgaacctggacaagttcgaggggcag
ccggacgaggagcagctggtgtcacgagcactggagctgctggatgagaacgagttctgg
gccgggatcgtcttcatggacctggaccccaactccgaggagttgcccgcgcacgtccgg
tacaagatccgcatggacatcgacagcgtgcaacggaccaacaagatcaaggacaggtac
tgggacccgggtcccagagccgaccccttcgacgacctccgctacatctggggcggtttc
gcgtacctccaggactccgtggagcaggggattatccgtgcccagaccaacgggagcctc
tccgtgggcgtctacgtgcagcagatgccatacccctgctatgtggacgacatcttcctg
cgcatcatgaaccgctcgctgcccatgttcctcacgctggcgtggatgtactcagtggcc
atgatcctgaaggaggttgtgcacgagaaggaggcgcggctcaaggagacgatgcgcatc
atgggcctcagcaccagcatgctgtggctcagctggttcatcagcatcctcatcccgctg
ctcatcagcgccatgctgctcaccgtgctgctcaagttggggaacatcctgtactacagc
gacccgactatcgtgtacctctacctgtgcgtgttcgccatcgccacggtcatgcagtgc
ttcctcatcagcacgttcttctcgcgtgccaacctggcagccgccacgggtggcatcgtc
tacttctctttctacctgccctacgtgctgtgcgtcgcttggcagaatcagatcacctac
tccgtcaagatctccacgagcatcttctccacggtggcctttagcttcggctcggagttc
ttctccctctacgaggagcagggcgtcggcatgcagtgggagaacgtcttctccagcccc
gtggagggcgaagactacaccttcatctcctccatattcatgatgctgtttgacgccttt
gtctacggcctcctcacagtctacatcgagaacgtgttccccggccagtacggagtcccc
aagccgtggtacttcccctgcacccgtgcctactggcgcggcgacaccatggagaaggag
ctgtacgagacgatcgctcagaaacaaccgcaggcggacaacatttacgtggaggacgag
ccgggcgacctgcccgtgggcgtctccatccagggcctggtgaagatctacaatgcgggc
aagaagctcgccgtcgacggcctgagcctcaacttctaccagggccagatcacctccttc
ctgggacacaacggggccggcaagaccaccaccatgtcgatcctgaccgggctgttccct
ccaacggccggcacggcgtacatcctcggaagagatatccggacggacatcgataaaatc
cgcaagaacctgggcgtgtgcccccagtacaacgtgctctttgaccgattgacggtggag
gagcacatctggttttatgcccggctgaagggtcgctccgagcaggaagcgaagcaggag
atcgagcagatgatccaggacgtggaccttgcccacaagagaagcgacatctccaagagc
ctctcaggcggcatgcagaggaagctgtccatcggcatcgcgttcgtgggcggctccaag
gtcgtgttcctggacgagcccacggccggcgtcgacccctacgcccgccgcggcatctgg
aacctcctgctcaagtaccggcacggccgcaccatcatcctgtccacgcaccacatggac
gaggcggacctcctgggcgaccgcatcgccatcatctcccacggccgcctgcgctgctgc
ggctcgtcgctcttcctgaagaacgcgttcggcgccggctactacctcaccatggtgaag
cgcagcggcagcggcgggagcaactcgagctgcctggccgggctggcgcgcttcgaggct
gacagcagcttcacggagcgcacgcgcagcctgctcatgcaggatgaccgccactcagcg
agcagctcggacgaaggattcggaagcgatgaatctaaccccgactcgatcgcagacgtg
agctcggtgacgcggctgctgcagcagcacgtgccggacgcccggctcatcgagaacttt
ggacaggagctgacctacttgctcccctcccacggcgccaaggacggcaccttcgcgctg
ctgttcaaggagctcgacgagaagctggcggagctcggcgtctcgagctacggcgtctcg
gacaccacgctcgaggagatcttcctgaaagtagccgaggagcctgccgccaacagtcac
gcaaacaatggggagattccgaggaagagacgcaggaggatacgcttctccgggtgtcat
ctgacgacccacgccgagcccgaagtggacatggaactggccgagaggaacgtgtttcaa
ggatacagaatcccagagctgtggaagaaagcagagctgggagagctggagaagttgaat
gagctcgatgggaagggcacgcagcaaatcagcggcgtacagctcatcctgctgcagttc
aaggccctcttcatcaagcgcttccaccatgcccgtcgcagccgcaagggattcgtggcc
cagatcatcttgccggctgtgttcgtttgcttggcactggtcttcagcctcatcatccct
ccgttcggaaagtacccaatgcttcagctgcagccctggatgtacggagagcagtacacg
ttcctgagtaatgacgctcctgagaacgtgaaaacgaactccctgtacgacgcgctgctc
aacaaaccgggcttcggcacgcgctgcatgaacggagaatccatcccggacgccgcctgc
gtggagacaaagtccgagtgggtccagccaccgatgtctccggcgatggcccggaccatg
cagtcgcggaactggagcatggaggatccatcgccggagtgccgatgcagcggagagggg
cgccgagtcatcctgcccgactgccctgaaggggctgggggaccgccccccatgcagaga
gtgcagaacaccacggacaccctggaggacttgtctgggcgaaacatctccgactacctc
gtcaagacctacccacaggccatccgcaagagtctgaagcacaagtactgggtgaatgaa
atcagatatgggggcctgtctgttggcaagaagaaattatcacattctgcctcccccaaa
gacatggacatcgtcttcacgaatgtcaagagggtcttccacattgagaacaaggctgtt
gatgtactgtacagtggcgtcaaagacatggtgtccttccttgggccaaaggaaactatc
aaggtttggttcaacaacaagggctggcacgccatcgtggccttcatgaacatggccaac
aacgcggtgctgcgctcgagcctgccagcgggcaccgacccctcagactacggcatcacg
gcctacaaccacccgctgaacctcaccaaggagcagctgtcggaggtcatgctgctgacg
acatcggtggacgtgctggtatccatctgcgtgatcttcgccatgtccttcgtgccggcg
agcttcgtgctcttcctcatccaggagcgagtgagcaaggccaagcacctgcagttcgtg
agcggagtgaacccgaccatctactggatctccaacttcgcctgggatatgctgaactac
acagtgccggcgacgctcgtggtgctgatattcctgtgcttccagcaacagtcgtacacg
tccgctgccaacctgcccgtgctcatcaccctgctgctgctctatgggtggtcgatcacc
ccgctcatgtacccagcgtcgttcatcttccgcgtgcccagcacggcgtacgtggtgctc
acctgcatcaacctcttcatcggcatcaatggcagcatcgccaccttcatcctcgagctc
ttcgaagatgaccagaacctcaagaggatcaactccattctcaagcagatcttcctcatc
ttcccgcacttctgccttggccgtggcctcatggacatggtgaagaaccaggccatgtcg
gacgcatttcagcgattcggagagaatcgctttgtggacccgttcagctgggacatggtc
ggcaagaacttatttgccatggccgtggagggcatgggcttctttatgatcaacctgctg
gtgcagtaccgctttttctggaagccccggtcgcaccgcgggaagctgcagccagtttcc
gaggaggacgaggatgtggcacgcgagaggacgcggttaaccaacgacgagggagggagc
gatacgcttgtcatcagaaacctcaccaaggtttacaatggcaaaaagaagccagcggtg
gatcgcatctgcgttgggattcctccgggagagtgttttggcctgctgggagtgaatggg
gctggaaaaaccacgacattcaagatgttgacaggagacacggacatcacaagcggggac
gcacttcttaaccgatacagcatcctgacccacaagcgggaggtgcaccagaacatgggc
tactgtccgcagttcgacgccatcaacgacctcatcacgggacgggagcacctggagttc
tacgcacgcctgcgcggggtccccgagaaggaggtgtccagggtggcagcgtggggcatc
cgcaagctcggtttgaccaagtacgcggatcgcgcggccggaaactacagcggagggaac
aagcggaagctgtcgacagccatcgccctcgtggggtgtcctcccatcgttttcctggac
gagccgaccaccgggatggacccgaaggcacggcgtttcctgtgggactgcatcctcagt
atcatcaaggaggggcggtgcgtgctgctcacctcgcacagcatggaggagtgtgaggcg
ctatgcacgcgcatgtccatcatggtgaacggaagattccaatgcctgggcagcgtgcag
catctcaagaacaagtttggcgacggctacacggtgacgctgcgcgtggccggctccccg
ccggtgctgccgcccgtcgaggagttcatcggctcggcgttccccggcagcctcctcaag
gagcgccaccacaacatgctgcagtaccagctgccctccgccgagtcctcgctcgccaag
atcttcaacctgctggcgctgcgcaaggaggagctcaacgtcgaggactactccgtctcc
cagaccacgctcgaccaggtgttcatcaattttgcgaagcaccaaagtgacgaggatcac
agcagcatcatccagacgagcgttgtctga
DBGET
integrated database retrieval system
