Petromyzon marinus (sea lamprey): 116952002
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Entry
116952002 CDS
T09614
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116952002
Membrane trafficking [BR:
pmrn04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
116952002
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
cEGF
FXa_inhibition
EGF_CA
SGL
EGF_3
Motif
Other DBs
NCBI-GeneID:
116952002
NCBI-ProteinID:
XP_032826857
UniProt:
A0AAJ7TZD3
LinkDB
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Position
44:complement(6847976..6894223)
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AA seq
1020 aa
AA seq
DB search
MAKHASSTRDTGRCASVAGVPVVFTASSQLWLWLLIAVALPGPLALAAAAPGEWTACLDT
QFQCRNGRCVTLTWRCDGDLDCPDNSDEENCPKHTCSERDFVCGNGDCIPLRWLCDGDVD
CVDRSDESQEHCSHRTCLTTDFSCGGIVAQCIPQAWRCDHETDCKNGADELDCGNVTCLP
DEFTCANHKCLAGRLRCDRDDDCGDGSDELGCPQLTCGPHEFACADLQQCMPRRWVCDKD
PDCQDGSDEWAQLCDKVSGNPESMATPDCEANGYRCGSGECVHGSWKCDGAEDCKDGSDE
HGCQYQASMGTCRPGEFPCVNGSVCVPAFNLCDERLDCPDGSDEARCPPNATDSCEPGQF
QCGTKDCIAASNVCDGVAHCRDGSDEHSEKCGVNECLVKNGGCTSICRDLLIGYECACQP
GFKLMPSGNCIAEDCEPDQFVCGSKECIDPAKVCDGTSHCRDGSDEPSSQCGVNECLHDN
GGCASICQDLKISYECQCLPGFQLVDGKVCVDVDECQRVGTCSQVCVNLKGGFKCECLNG
YLLDPKTGVCKALGKEPYVIFTNRHDIRKLDTARNEYSQVVPRTRNAVALSVHVSNNTIL
WSDQHQKLILSAVIGKASDSKNHAVVIEQGLSFVEGLAVDWIHNTLYWSDSGFKTLSVAT
MDGRRRKLFDSGLQEPRAIVVDPIAGWLYWSDWGEPAKIEKAGMNGANRHAIVTHDIQWP
NGIALDLANRRLYWVDSKLHTLSSVDMSGQDRVTVLASYSDLLHPFSIAVFEDKVYWTDG
EEEAIFSMNKFTGSGRRVLAENLHSPQDIVVVHPLAQPSGPNRCEGSGCEYLCLPAPKVD
AALPLFSCACADNSHLNPDGKTCSAAVGVVSTAARPTINAENAPIPGAAVGPGSTAAMPT
METTAPIIPTLPTGNRGWLEAWLSTEAPSIATNAESEGGSASTVVGVLIPLAILAMVCVA
GFYLWRNWKLRNTKSMNFDNPVYRKTTEDDDFALDHNASLGPSVGHVYPPLMAVSTEDDE
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcatgcttcgtctactcgggataccgggcgatgtgcgtctgtggctggggtc
cctgtcgtgttcacggcctcgtcccagctgtggctgtggctgctgatcgccgtggccttg
ccggggccgctcgccttggcagccgcagcgccaggcgagtggactgcttgcttggataca
cagttccagtgccgtaacggacggtgcgtgactctcacctggcgctgtgatggtgacctc
gactgcccagacaacagtgacgaggaaaactgcccgaagcacacctgctctgagcgcgac
tttgtctgcggcaacggcgactgcatccctctgcgatggctgtgcgacggagacgtggac
tgcgtggatcgttcggacgaatcgcaggagcattgcagccaccggacatgcctcaccact
gacttcagctgcgggggcatcgtggcccagtgcataccccaggcgtggcgatgtgaccac
gaaaccgactgcaagaacggtgccgacgagctggactgcggcaacgtgacatgcttgccg
gacgagttcacctgcgccaaccacaagtgcctggcaggccgcttgcgctgtgaccgcgat
gacgactgtggcgacggctctgacgagctgggctgcccccagctcacgtgcggccctcac
gagtttgcctgtgccgacctccagcagtgcatgccccgccgctgggtttgtgacaaagat
cccgactgccaggatggctctgacgagtgggcgcagctgtgtgataaggtgtcgggcaac
ccagagtcgatggcgacgccggactgcgaggcgaacggctaccgctgcggcagcggggag
tgcgtgcacggcagctggaagtgtgacggtgcagaagactgcaaggacggcagcgatgag
cacggctgccaataccaggcgtcgatggggacgtgccgcccgggcgagtttccctgcgtc
aacggctctgtgtgcgtccctgcgtttaacttgtgcgacgagcgactggactgccctgac
gggagcgacgaggctcgatgcccgcccaacgcgacggactcttgtgaaccgggccagttc
cagtgcggcaccaaggactgcatcgccgcgagcaacgtgtgcgacggtgtcgctcactgc
agggatggctctgacgaacacagcgagaagtgcggtgttaacgagtgtttggtgaaaaat
ggtggatgtacctcgatttgtcgggacctcctgattggctacgagtgtgcctgtcagccg
ggcttcaagctcatgccctctgggaattgcatcgctgaagactgtgaaccggaccagttc
gtgtgcggcagcaaggagtgcatcgaccccgccaaggtgtgcgacggcaccagccactgc
agggatggctctgatgaacccagcagccaatgtggggtgaacgaatgcctgcacgacaat
ggaggatgcgcttcgatctgccaggatctcaagattagctacgagtgccagtgtctgccg
ggatttcagctcgtggatgggaaagtctgcgtagacgtggacgagtgccagcgtgtgggc
acgtgcagccaggtgtgcgtgaacctcaagggaggcttcaagtgcgagtgtctcaacggc
tacctcctggaccccaagactggcgtctgcaaggctctcggcaaggaaccgtacgtgatc
ttcacgaaccgccacgacatccgcaagctggacacggcacgcaacgagtactcgcaggtg
gtgccacgcacgcgcaacgcggtggcactgagcgtgcacgtctccaacaacaccatcctg
tggtctgaccaacaccagaagctcatcctcagcgctgtgatcggcaaggccagtgactcg
aagaaccacgcggtggtgattgagcaaggcttgagctttgtggagggattggcggtggac
tggatccacaacaccctctactggtccgactctggcttcaagaccttgtcggtggccacg
atggacgggcggcggcgcaagttgtttgacagcggcctgcaggagccgcgtgctatcgtg
gtggaccccatcgctggatggctttactggtctgactggggcgagccggcaaagattgag
aaggccggaatgaatggtgccaaccggcacgcgatcgtcacccacgacatccagtggcca
aacggcatcgctctcgacttggcaaaccgccgtctctactgggtggactcgaagctgcac
acgctctccagcgtcgacatgtctgggcaggaccgtgttacagtgctcgcatcctacagt
gatctcctgcacccgttctcgattgctgtattcgaggacaaggtgtactggacggatggt
gaagaggaggccatattcagcatgaacaagttcacaggcagtggacggcgtgtgcttgct
gaaaaccttcacagcccccaggacatcgtggtggtgcaccccctcgcgcagcccagcggc
cccaatcggtgcgagggcagtggctgcgagtatctctgtctgccggcaccaaaggtcgat
gctgcattgccgctcttctcctgcgcttgtgccgacaattcccatctcaaccccgacgga
aaaacctgcagcgccgccgtcggcgtggtgtccactgcagcgcgaccgaccatcaacgcc
gagaatgcgccaatcccaggtgccgcagttggcccaggtagtacggctgccatgcccacc
atggaaacaactgcccccatcatccccaccctgcctacaggcaacaggggctggctggag
gcctggctgtcgacggaagctccgtcaattgccaccaacgcggaatcggagggtggctct
gcctccacggtggtcggggttctcatcccgttggcgatcttggccatggtgtgtgtggct
ggcttctacctttggcggaactggaagttgagaaacaccaagagcatgaactttgacaac
cccgtgtatcgaaagacgaccgaggacgacgactttgcgctggaccacaacgcgtcgctc
ggcccctctgtgggccacgtctacccgccgctgatggcggtgagcacagaagacgacgag
tga
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