Petromyzon marinus (sea lamprey): 116952117
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Entry
116952117 CDS
T09614
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116952117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116952117
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116952117
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116952117
Coactivators
SAGA/TFTC/STAGA complex
116952117
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116952117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
116952117
NCBI-ProteinID:
XP_032827060
UniProt:
A0AAJ7XAC7
LinkDB
All DBs
Position
45:6153955..6178967
Genome browser
AA seq
1209 aa
AA seq
DB search
MANASDPLLEMFTTDVDEKAVSELVGSLESRLSRQRPTVLNSHAQQAQQHPQQQQQQQPP
DRGGGRLGAPAAAGGGASKAAAPDLGEAEARSGTLGPPMKRTAATGILLLHQQQQQYQQL
QQQQQQVGGTNCQRHGGVVASGVSVAASSASVAAALPSSLSASSASSLSSLSSTSSLLSA
AASSSSSSSSSSASLSSPSTSLAQAASSLTQSSLSAAASTCSSSSFSSQSSSVSAPASSS
SSSSTTTTSSLSNHADVPVLTLGRTPVTQTVGSAGQPLNGGSVYGAPAGGGGVVVGGGVG
VVSPARTSSISSGGNSNNGVAPSVVAVDSGRMNFNVTASTNLNPNVTPNPIITAAATTTI
ITTSTNPSVTSTNPNVATTAAAAATSNPGLIPSPGAATPPTITLQRPPSSHNGAPNSIVS
TSSIISTSSNISSSNSTGHPPLMCTTPGGVVSGQPSVISAVASRPAITLISSPQQQQQQQ
QQQQQQQQTAIVPTLAPSVTGMVPLAGGHSGMVRVSVPPPPSPGPALSPARPGLALQQRL
LPPQIIAPRPQTIQLPPGFTLPPGTVMVRAGEQGQLFLIQQSVLAQAGGAAPHAAPVPPS
PTVATVAHTPSPPAASPATQPQQGVRLAALQVPALPSSLRAPPHSATTNHHPNLRKKAKR
RRWGGAPTLAAATPAPPAGPALPTSQPPLVFTPEVMENVKKCKNFLSTLIKLASSGQQSP
ETTRNVKELVQNLLDAKMEPEEFTSRLQKELKSSPQPYLVPFLKKSLPAVRYLAQNPQAS
TQAVPQLNAIGTPTTSTSAARPLGAQTHAAQAPLHTVLTTQHGGGVKQIVLQSQARGSTH
IKPGTVVKAQGPALIRPPSTGVPGATGLQASASQKGKMKDLGGGTFKDDDDINDVASMAG
VNINEESARIAATGSDTVGTQIRSCRDEAFLSAGPLQRRLLDIGRRYGVTEVPADVVGLV
SHAAQERLKNLVERLSVIAQHRTETYRDSDDSEQMSDVRSQLRFFEQLDRLEKQRKDEQE
REILLRAAKSRSRQEDPEQARLKQKAKEMQQAELAQMRQREANLTALAAIGPRKKRKLDS
PGPGTPGEVGGSVQLAPSRVYKDKRSPLPWSLNRLLGQVLWSAPCPAPFATRPVLMFTHR
TRYSFVSTYGRRRTGSGGGGGGGGGVPGTPTRPSQRARFTRVNLRDLVFLLEQDRETAHS
LVLYRAQLK
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcgagcgacccgctcttggagatgttcaccacggacgtggacgagaaggcg
gtgagcgagctggtgggctcgctcgagtcgcgcctgtcgcgacagcggcccacggtgctc
aacagccacgcgcagcaagcgcagcagcacccgcagcagcagcagcagcaacagccgccg
gaccgaggaggtggccggctcggagccccggctgccgcgggcggaggcgcctcgaaagcc
gcggcgccggatttaggcgaggccgaggctcggtccgggacgctgggcccccccatgaag
agaacggctgcgacgggaattttactcttgcatcagcaacagcagcagtatcaacagctg
caacagcagcagcagcaggtcggcgggacgaattgccagagacacggcggagtggtggct
tcgggtgtgagtgtcgctgcatcatcggcatcggtggcggcagctttaccgtcttcgtta
tcggcatcgtcggcatcatcactatcatcactatcatcaacgtcttcactgttatcagca
gcagcgtcgtcgtcctcgtcatcatcatcatcatcggcatcactttcatcaccgtcaaca
tcgttagcgcaagcagcatcatcattgacacagtcatcgttatcggcagctgcatccacc
tgttcatcttcctcgttttcatcgcagtcatcgtccgtttcggcccctgcatcatcatca
tcatcatcctccaccaccaccacctcctcgctgtccaaccacgccgatgttcccgtgcta
actttgggccgaacaccggtgacccaaacggtcggctccgccgggcaacctctgaacgga
ggctccgtgtacggggcacccgctgggggaggaggcgtcgttgttggcggtggagtcggt
gtagtttcaccggcaaggacctcgagcattagcagcggtggcaacagcaacaacggcgtg
gctccgtcggtggttgcagtggactcggggcggatgaacttcaatgtcaccgcctccacc
aacctcaaccctaacgtcacccccaaccccatcatcaccgccgccgccaccaccaccatc
atcaccacctccaccaaccccagtgttacttccaccaaccccaacgttgccaccaccgcc
gccgccgccgccacttccaaccccggtctcatcccgagccctggagcagcgacgcctccc
acgatcactctgcagcggccaccttcgagccacaacggagcaccaaacagcatcgtcagc
accagcagtattataagcaccagcagcaacatcagcagcagcaactccaccggacaccca
ccgctcatgtgcaccacgccggggggtgttgtgagcgggcagccgtcggtcataagtgcc
gtggcctctcgccccgcgatcaccctcatcagcagtccgcaacagcagcagcaacaacag
cagcaacaacagcagcagcagcagactgctattgtgcccaccttggcgcccagcgttacg
gggatggtgcctctggctggtgggcacagtggcatggtaagggtgagcgtaccgcctcca
ccctcgcccggaccggcgctgagcccagcgcgaccgggtcttgcactccagcagaggctg
ctgccgccgcagatcattgccccacgaccgcaaacaatccagcttcctcctggcttcacc
ttgccaccaggtacggtgatggtgcgcgccggcgagcagggccagctcttcctcatccag
cagtcggtgttggcgcaggccggtggcgccgccccccacgccgcccccgtgcccccctcc
cccaccgtggccacggtggcgcacacccccagcccaccggccgccagccctgccacccaa
ccgcagcagggagtgcggctagccgcgctgcaggtacccgcgctaccttcgtctctccgt
gcaccaccgcactcggcaaccactaaccaccacccaaacttaagaaaaaaagctaagcgg
cgccggtgggggggggcgcccacgctcgccgctgcgacgccggcccctcccgcaggcccc
gcccttcccaccagccagccgccgctcgtcttcacaccggaggtgatggagaacgtcaag
aagtgcaagaacttcctctcgacgctcatcaagctggcgtcgtctggtcagcagtcgccc
gagacgacgcgcaacgtcaaggagctggtgcaaaacctcctggatgccaagatggaaccg
gaggagttcacatcgcggctgcagaaggagctcaagtcgtcgccacagccctacctcgtg
cccttcctcaagaaaagcctgccggccgtgcgctacctggcgcagaacccgcaagcgtcg
acccaggcggtcccgcagctcaacgcgatcgggaccccgacgacctcgactagcgccgcg
cgacccctgggagcgcagacgcacgcggcgcaggcaccgctacacacggttctgacgacg
cagcatgggggtggagtgaagcagattgtgctacagtcgcaggctcgcggcagcactcac
atcaagcccggcacggtggtcaaggctcagggccctgctctcatcaggccaccctccaca
ggagtgccgggagccaccgggctgcaggcatcggcgagccagaaggggaagatgaaggat
ctggggggcggcaccttcaaggacgatgacgacatcaacgacgtcgcctccatggcgggc
gtgaacatcaacgaggagagcgcgcgcatcgcggccacgggctccgacacggtggggacg
cagatccgttcgtgccgtgacgaggccttcctgtcggcagggcccctccagcgccgcctg
ctcgacattggccggcggtacggcgtgacggaggtgccggcggacgtggtggggttggtg
tcgcacgcggcgcaggagaggctcaagaacctggtggagaggctgagtgtcatcgcacag
caccgcaccgagacgtacagggactcggacgactcggagcagatgagcgacgtgaggtct
cagctcaggttcttcgagcagctcgaccgcctggagaagcagcgcaaggacgagcaagag
cgcgagattctactcagggcggccaagagtcggtctcgacaagaggacccagaacaagcc
cggctcaagcagaaagcaaaagagatgcagcaagcggagctggctcagatgcgccagcgg
gaagcgaacctgacggcgctcgcggcaattgggccacgcaagaagcggaaactcgactcg
ccagggccgggcacgccgggggaggtgggggggagcgtgcaactcgcaccgtcacgcgtg
tacaaagacaaaagatcccccctcccatggagccttaacaggctgttggggcaagtgctg
tggtcagcaccctgcccggcaccctttgccacccggccagtgctgatgtttactcatcgc
accaggtactcgtttgtgtcgacctatgggaggcgcaggacaggttcaggcggcggcggc
ggcggcggcggcggggtgccgggcacgccgacgagaccgtcgcagcgagcgcgcttcacg
agggtcaacctgcgcgacctcgtcttcttgctggaacaagatcgcgagacggcgcactcg
ctcgtgctgtaccgcgcgcagctcaagtga
DBGET
integrated database retrieval system
