Petromyzon marinus (sea lamprey): 116952264
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Entry
116952264 CDS
T09614
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03018
RNA degradation
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116952264 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
116952264 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116952264 (LSM8)
03041 Spliceosome [BR:
pmrn03041
]
116952264 (LSM8)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116952264 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
116952264 (LSM8)
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116952264 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
116952264
NCBI-ProteinID:
XP_032827347
UniProt:
A0AAJ7XAT1
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Position
46:complement(7942442..7952067)
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AA seq
96 aa
AA seq
DB search
MASALETYVNHTVSVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDDDTDGALDLGNIRAEPLNPIIH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcgctggagacttacgtaaaccacacggtctccgtcatcactgcagacggg
aggatgatcgtgggaaccctcaagggctttgaccagaccatcaacctcatcctggacgag
agccacgaacgcgtgttcagctcgagccagggcgtggagcaggtggtgctgggcctctac
atcgtgcgtggagacaacgtagcggtgatcggagagatcgatgacgacacagacggggcg
ctggacttgggcaacatccgcgcggagcctctcaacccaatcatccactag
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