Petromyzon marinus (sea lamprey): 116952290
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Entry
116952290 CDS
T09614
Symbol
RBM17
Name
(RefSeq) splicing factor 45 isoform X1
KO
K12840
splicing factor 45
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116952290 (RBM17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116952290 (RBM17)
Spliceosome [BR:
pmrn03041
]
Complex A
U2 snRNP components
U2 related factors
116952290 (RBM17)
Complex B
116952290 (RBM17)
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Gene cluster
GFIT
Motif
Pfam:
G-patch
RRM_1
RBM39linker
Motif
Other DBs
NCBI-GeneID:
116952290
NCBI-ProteinID:
XP_032827391
UniProt:
A0AAJ7XAL8
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Position
46:5665226..5680061
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AA seq
423 aa
AA seq
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MSLYDDLRVERSDSKTEGWSKNFKLLQSQLQVKKAALTQAKNQRGKQSTVLAPVVDLKRN
SGPEERTSFPEPPPPPPVATTPKVESGAAQMAFMGEMLIPVADEYDPMYPNDYDKVVKRQ
REDRQRQREHERQKEIDDREKRRKERHEASGMSRRPESDDEEEYEVEKRKRGTMGAAIAP
PSSLMERDKDLAPDDEIKRGRMSGKAAIPPPNYEDSGERPRSPPGGSSSFISNMGGTVAH
KIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIVIGDNVPKEAEAATVVAAAAAAA
ASASPSPASAKKQEPNPLTEILKNPTKVVLLRNMVGPGEVDEDLESETKEECEKYGKVIK
CVIFEMPGAPEDDAVRIFLEFERMESAIKAVVDLNGRYFGGRIVKAGFYNLDKFRRLDLA
TSV
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtacgatgatcttcgcgtggagaggagcgactccaagacagagggatggtcc
aagaacttcaagctcctgcagtcgcagctgcaggttaagaaggcggcgctcacacaggcc
aagaaccagaggggcaagcagagcacagtgctggcacctgtggttgacctcaagcgcaac
tcgggtccagaggagcggacgagtttccctgagccgccgccgcctccgccagtcgccacc
acacccaaggtggagtccggcgccgcacagatggccttcatgggggagatgctgatcccc
gtggcggatgagtacgacccgatgtaccccaacgactacgacaaggtggtgaagcggcag
cgggaggaccgacaacgtcagcgtgagcacgagcggcagaaggagatagacgacagggag
aagaggcggaaggagcgtcacgaggcgagcggcatgtcacggcgacccgagtcggacgac
gaggaggagtacgaggtggagaaacgcaaacgaggcacaatgggagctgccatcgcgcca
ccatcatcgctcatggagagggacaaagacttggctcctgacgatgagatcaaacgcggg
cggatgtcgggtaaagcggccatccctccccccaactacgaggactcgggcgagaggccg
cgctccccacctggtggctccagctccttcatctccaacatgggaggcacggtggcgcac
aagatcatgcagaagtacggcttccgcgaggggcagggcctgggcaagcacgagcagggc
ctgagcacggcgctgtccgtcgagaagacgagcaagcgcggcggcaagatcgtcatcgga
gacaacgtgcccaaggaggccgaagctgcgacggtggtggctgctgcggcggcagcggcg
gcatcggcgtcgccatcgccagcatcggccaaaaaacaggagccaaaccccctgacggag
attctgaagaacccgaccaaagtggtgctgctgcggaacatggttggccccggcgaggtt
gacgaggacctagagagcgagaccaaggaggagtgcgagaagtacggcaaggtgatcaag
tgtgtcatcttcgagatgccgggcgcccccgaggatgatgcggtgcggattttcctcgag
tttgagcggatggagtcggcgatcaaagctgtcgttgacctgaacggacgctactttggc
ggtcgcatcgttaaagccggcttctacaacctcgacaagttccgccgtcttgacctggcc
acctcagtgtga
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