Petromyzon marinus (sea lamprey): 116952474
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Entry
116952474 CDS
T09614
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04382
Cornified envelope formation
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
pmrn04518
Integrin signaling
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116952474
04518 Integrin signaling
116952474
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116952474
09142 Cell motility
04820 Cytoskeleton in muscle cells
116952474
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116952474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmrn04147
]
116952474
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116952474
Exosome [BR:
pmrn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116952474
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116952474
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116952474
NCBI-ProteinID:
XP_032827747
UniProt:
A0AAJ7U3S0
LinkDB
All DBs
Position
47:complement(5595125..5734822)
Genome browser
AA seq
1690 aa
AA seq
DB search
MAMSRHDVRAKLWALVIMANAFAWLITGGESAACHGCSPGSKCDCSGVKGDRGDRGLPGL
QGPSGLPGFPGPEGQPGLRGLKGDTGDSGPYGPKGNRGAPGMPGFPGTPGIPGLPGQDGP
QGPHGIPGCNGTKGERGYPGRPGLPGLLGPTGIPGLPGMKGDPGEFFSSFPGQKGDPGLP
GIPGHAGQPGSSGLPGPFGPPGPRGFPGPPGSPGSPGPKGSMGLNFEGQKGEKGSTGPAG
PPGPPAGPPAQEKPPEGVFYKGNKGDAGPPGFPGRDGLQGPPGMPGFGLAGEKGEPGEAG
KRGKPGKDGDPGLPGLEGQPGTPGFPGNPGFDGQKGSKGDPGLQGPPGQVIGQPPPHGFG
SKGDTGFPGAPGEKGEPGFTGPPGLNGAPGPPGITIQGPLGQPGISGERGQKGDPGPPGL
SFPGQQGRDGQPGAPGPQGQPGLPGSPAVVTPGLPGRGLPGPPGPMGPKGFSGERGHKGD
KGDTCRDCFGGVGPGRPGLQGPPGPPGMRGFDGAQGNPGLKGDRGFAGNPGSPGSRGFPG
ESGPQGPPGMKGDPGDALGLPGLKGDKGDTGFSGSPGPAGLEGRPGVDGRPGNPGAKGDP
APFGVKGERGAPGDQGQAGLSGERGQPGLPGFGPPGYQGMKGVQGVPGRTGPPGPPGVKG
EPGKTMSEPGQPGPPGLPGSPGSPGSPGSSGIPGSAGLPGLQGVKGDAGLPGFGSPGPPG
PKGNQGNPGLPGQPGGPGRPGQDGFPGSPGQPGLKGDGGVGSPGPRGPPGSPGLDGLSGS
KGDSGFPGLPGQPGRPGLDGVPGTKGDVGNSGLPGRPGAQGPPGQGFPGAQGPPGSPGQV
GPEGSPGPKGDKGDYGAPGLNMPGPPGDRGNPGFPGTPGGIGSPGSPGQPGRNGFPGTPG
SKGDMGVMGTPGASGPPGPFGQIGPPGPRGNEGQPGLPGEPGDLGFKGNKGDPGIPGPSV
PIGTVTTKGEKGEKGAGGTPGMPGPKGFQGVPGANGQPGQAGLPGTHGQSGPKGDSGFPG
NPGQPGQPGPKGSMGEMGFPGPPGSKGIPGNPGLQGSPGSPGFSGMKGAKGESAQPGQGI
PGPPGPKGDVGSPGFNGPPGQKGSPGTPGLPGLPGNPGSKGEHGQPGFPGNPGLPGSKGQ
DGFPGGPGRPGGPGLPGDAGRPGLPGPSGEKGFPGKDGIPGTAGPRGDPGPPGRGAPGPP
GNSGFPGIKGDPGRPGVGGVPGFSGAKGDPGEKGPMGIDGPPGSPGPPGRTVEGVKGNAG
LPGLPGLPGNPGFPGQPGPPGIGGIKGDRGNPGLPGNSGPSGLKGESGFPGQPGNLGRPG
FDGPKGDPGPQGPPGFPGMKGSSGLPGINGGLGERGFPGPPGPEGPPGPRSPVSYVKGDP
GPSGNPGLPGPRGPPGQPGQPGLPGSPGQPGGPGEDGLPGSDGPSGRKGQTGPSGRAGER
GFPGPQGTDGIPGIPGQPGPPSMPHGFMVTRHSQSVEVPACPLGLVKLYDGYSLLYVQGN
ERSHGQDLGTAGSCLRRFSTMPFMFCNLNNVCNFASRNDYSYWLSTPQPMTMNMAPVHGQ
QIQPFISRCAVCEAPAMVIAVHSQSIVIPPCPNGWASIWIGYSFMMHTSAGAEGSGQALA
SPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVENNEMFKKPQSETLKAGELRSRI
SRCQVCMRKT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggccatgagtcgacacgacgtgagagccaagctgtgggctctggttatcatggccaac
gctttcgcctggctcatcaccggtggcgagtccgcggcgtgccatggctgctctccgggg
tctaaatgtgactgcagcggagtgaaaggagaccggggagacaggggccttcctggactg
caggggccttcaggccttcccggatttcctgggcccgaggggcagccgggcctgaggggt
ctcaagggcgacactggagactctggcccgtatggaccaaaaggaaatcgcggtgcccca
ggaatgccaggatttcctgggacacctggtatcccgggtttgccgggacaagatggccct
caagggcctcacggtatcccaggatgcaatgggactaagggagagaggggatatcctggc
cgtccgggattaccaggattactgggcccaacgggaataccgggactgccaggcatgaag
ggcgatcctggagagttcttttcttcgtttccggggcagaagggcgaccctggtttacct
ggaattccggggcacgccgggcagcctgggagctcagggctgccaggaccatttggacca
cctggaccaagaggttttcctggcccacctggttcacccgggtcccctggcccaaagggt
tccatgggtttgaattttgaaggacagaagggtgaaaagggtagcaccggacccgcgggc
cctccggggcctcctgcagggccgcccgctcaggaaaagccgccggagggagtgttttac
aaaggcaataagggagacgctggaccccctggttttccaggcagggatggtcttcaaggt
cctccgggtatgcccgggtttggattggcaggagaaaaaggagagccgggggaggctgga
aaacgcgggaagccgggaaaagatggagaccccggccttccgggtttggagggtcagcca
gggacacctggatttcctggaaaccctggcttcgatggacagaagggttcaaaaggagac
cctggtttgcaagggccccctggccaggttattggccaaccacctccacatggctttggg
tccaaaggtgacacaggatttcctggcgcaccgggagaaaaaggagaacctggttttaca
ggaccacctgggttgaacggtgcaccgggtcccccaggtatcacgatacagggccctctg
gggcaaccagggatttcgggagaaaggggccagaagggtgacccgggacccccaggacta
agcttcccagggcagcagggccgggatgggcagcctggggctcctggtccacaggggcag
ccgggtctccctggctcaccagccgtggtcacccctggtctccccgggcgaggattacca
ggcccgcctggcccaatgggaccgaaaggcttctctggagagaggggacataaaggcgac
aaaggcgacacgtgccgggattgtttcggaggagtggggcccggtcgcccagggttacag
ggacctcctggtccccctggcatgcgaggtttcgacggtgctcaaggtaacccaggcctg
aagggagacagagggtttgctggcaacccaggctctccaggttcgcgaggatttcctggg
gagtcaggcccccaggggcccccaggaatgaagggggatcctggagacgcactgggcctg
cctgggctgaagggagacaagggcgacacgggtttctccgggtctcctgggcctgctggg
ctcgagggccgccctggtgtggatgggcggcctgggaaccccggtgctaagggcgaccct
gctccgtttggcgtgaaaggcgaacggggggcgccaggagaccaaggccaggccggcctg
tccggggaaagagggcagcctggcttgcctggtttcggccccccaggataccaggggatg
aagggagtccaaggggtgcctggtcgtaccggcccacccggcccaccaggtgtgaagggg
gagccaggaaagacaatgtcggagccaggacaacctggacctcctggcttacctggatca
cctggatcccctggctctccaggcagctcgggcatccctggctccgctggattgccaggc
ttgcaaggggtgaaaggcgacgcgggcttgccaggatttgggtctcctgggccacccggt
ccaaagggtaaccaaggcaacccagggttaccaggacagccaggaggacctgggcgccct
ggacaagacggattcccggggagccctggacagcccggactaaagggtgacggaggcgtt
ggttccccgggcccccgtggacctccggggtctcctggcctcgacggactgtccggttcc
aagggagacagcggcttccccggcctgccggggcaaccgggcaggccggggctcgacggc
gtgccgggaaccaagggagacgtcgggaattcgggattgcccggtcgcccgggagcacag
ggcccccctggacaaggattcccaggagctcaaggtcccccaggatctccgggacaagtt
ggacctgaaggttcaccagggccgaagggagacaagggagactacggagccccaggattg
aacatgccgggacctccaggagacaggggcaaccctggtttccccggcacgcccggtggc
attggatcaccaggatcgccgggacagcccggaaggaacggcttcccaggcacaccaggt
tccaaaggagacatgggagtcatggggacacctggggcctctggtcctcctggtcctttt
gggcagatcggcccaccgggacccagaggcaacgaggggcagcctggcctgccaggcgaa
ccgggcgacttgggcttcaagggaaacaaaggcgatcctgggatccccggcccatccgtc
cccattggcactgtgacaacgaagggagaaaagggagagaaaggggctggtggtactcct
ggcatgccaggccccaagggattccaaggagtgcctggcgccaatgggcagcctggtcag
gcgggtcttcccgggacacatggccagtcaggtcccaaaggagattctggattcccaggc
aatcctggccaacctgggcagccgggtcccaagggctccatgggagagatgggctttcca
ggtcctcctggttcaaagggcattccgggcaacccaggtctccagggttccccaggatct
cctggattctctggcatgaaaggagctaagggcgagtctgcccagccaggccaaggaatt
cctggaccgcctggcccaaagggtgatgtagggagccccggattcaatggaccacctgga
cagaaaggttccccgggaactcctggccttcccgggcttcccggcaatccgggttcaaag
ggagaacacgggcagccaggatttccaggcaacccagggcttccaggttctaaaggtcaa
gatggattccccggaggaccaggccgtcccggaggcccaggcttgccaggagatgcaggc
cgccctggattgcctggcccgtcgggagagaagggatttcctggaaaggatggtattcct
ggcacggcaggacctaggggagaccctggtccgcctggcaggggagctccgggtcccccc
gggaactccggcttcccaggtataaagggagacccgggccgtcccggcgtgggcggggtc
cctggcttcagtggtgcaaagggcgaccctggagaaaaggggccaatgggcatcgatgga
cccccgggttctcctggtcctcccgggcgaactgtagaaggagtcaagggcaacgcgggt
ctccctggacttccaggtctcccaggaaaccctggctttccaggccagcctgggcccccc
gggattggcggaatcaagggggatcgtggcaacccaggactccccggaaattctggcccg
tccggcttgaagggagagagtggctttccaggacaacccggcaacttggggcggccaggc
ttcgatggccccaagggtgacccgggtcctcagggtcccccgggattccccggtatgaag
ggctcttctggcctcccaggcatcaacgggggcctaggagagaggggcttccctgggcca
ccagggcctgaaggtcctcccggcccccggagccccgtctcgtacgtgaagggagacccg
ggcccgtcgggcaaccccgggctgcccggcccacgtggtcctccaggccagcccggccag
cccggactgccaggttctcccggtcagccgggaggaccaggtgaggacggccttcccgga
agtgatgggccatccggaaggaagggccagactggtccatctggtcgcgcaggcgagcga
ggattcccgggcccgcagggcaccgacggaattccaggaatcccgggacagcccggccct
ccctccatgccgcacggattcatggtgacgcgccacagccagtcggtggaggtgcccgcg
tgcccgttgggcctcgtcaagctgtacgacggctactcgctgctctacgtgcagggcaac
gaacgctcacacggccaggacctcggcacggcgggcagctgtctgcgccgcttcagcacg
atgcccttcatgttctgcaacctgaacaacgtctgcaatttcgcgtcacgcaacgactac
tcctactggctctccacgccgcagcccatgaccatgaacatggctcctgtccacggccag
cagatccaacctttcatcagcagatgtgcagtgtgcgaggcgccggcgatggtgatcgct
gttcacagccaatccatcgtgatcccaccgtgtcccaacggatgggcctccatttggatc
ggctactcgttcatgatgcacacgagtgccggtgccgagggctcgggtcaggccctggcg
tcgcctggctcctgcctcgaggagttccgctcggcgcccttcatcgagtgccacggccgc
ggaacgtgcaactactacgccaactcctacagcttctggctcgccaccgtcgagaacaac
gagatgttcaagaagccacagtcggaaacgctcaaggctggagagctgcgttcgaggata
agccggtgccaagtctgcatgaggaagacataa
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integrated database retrieval system
