Petromyzon marinus (sea lamprey): 116952599
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Entry
116952599 CDS
T09614
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03020
RNA polymerase
pmrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116952599
09124 Replication and repair
03420 Nucleotide excision repair
116952599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116952599
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116952599
Enzymes [BR:
pmrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116952599
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116952599
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116952599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
bCoV_S1_N
DUF5817
Motif
Other DBs
NCBI-GeneID:
116952599
NCBI-ProteinID:
XP_032828003
UniProt:
A0AAJ7U480
LinkDB
All DBs
Position
47:complement(7708956..7752160)
Genome browser
AA seq
1179 aa
AA seq
DB search
MYYPDEEVRCDEEDEEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHASGQIETPPRYSVRFEQIYLSKPTHWERDGAPAPMMPNEARLRNLTY
SAPLYVDITKSVTTAGGGEEQQQQRLQTHEKTFIGKIPIMLRSTYCLLSGLTDRDLCELN
ECPLDPGGYFVINGSEKVLIAQEKMATNSVYVFAKKESRFAFSAECRSCLENSSRPVSTI
WVSMLARGGQGVRKSTIGQRIVGTLPYIRQEVPIMVVFRGLGFVSDRDILEHIIYDFDDP
EMMEMLKPSLDEAFVIQEQSVALNFIGSRGAKPGVTKEKRIKYARDILQKEMLPHVGVSD
FCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFLGLFKTLGKEV
RIYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTY
ASTLSHLRRLNSPCDRGSKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVG
SQPSPILEFLEEWSMENLEEISPSAIADATKIFVNGCWVGIHKDPEQLMTTLRKLRRQMD
IIVSEVSMVRDIREREIRIHTDAGRICRPLLIVEKQRLLLKRRHIEQLKEREYNGYSWQE
LVASGVVEYIDTLEEESAMIAMSPDDLQERGVAYCCTYTHCEVHPAMILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAG
INSIVAIASYTGYNQEDSIIMNRSAVERGYFRSVFYRSYTDQESKRSYDQEEVFEKPTRE
TCQGMRHAIYDKLDDDGLVSPGVRVSGDDVIIGKTASLPVTDDELDSVATRFVKRDTSTF
LRSSETGIVDQVMVTLNQDGYKFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP
FTCEGLSPDIIINPHAIPSRMTIGHMIECIQGKVSANKGEIGDATPFNDTVNVQKVSNLL
QEYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM
EGRSRDGGLRFGEMERDCQIAHGAAQFLQERLFEVSDPYQVHVCNLCGLMAIANTRTHTY
ECRACRNKTQMSLVRLPYACKLLFQELLSMSIAPRMMVT
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtattatccagacgaggaggtgcggtgtgatgaggaggatgaagaaatcacgccggat
ttatggcaggaggcgtgctggattgtcattagctcgtactttgatgagaaggggttggtg
cggcagcagctggactcgttcgacgagttcatccagatgtccgtgcagcgcatcgtggag
gactcgccccccatcgagctgcaggccgaggctcagcacgcgtccggccagatcgagact
ccgccgcggtacagcgtccgcttcgagcagatctacctctccaagcccacgcactgggaa
cgcgacggggcccccgcccccatgatgcccaacgaggcgagactccgcaacctcacgtac
tcggccccgctctacgtggacatcaccaagagcgtaacgaccgctggcggcggcgaggag
cagcagcagcagcgcttgcagacgcacgagaagaccttcatcggcaagatccccatcatg
ctgcgctccacctactgcctgctcagcggcctcaccgaccgcgacctctgcgagctcaac
gagtgccccctggaccccggcggttacttcgtcatcaacggctccgagaaggtgctcatt
gcccaggagaagatggccaccaactccgtgtacgtgttcgccaagaaggagtcgcgcttt
gccttctcagccgagtgccgctcctgcctggagaactcgtcgcggccggtcagcacgata
tgggtcagcatgctggcccgcggcggacagggcgtgcggaaaagcaccatcggccagcgc
attgtcggcacgctgccctacatccgccaagaggtgcccatcatggtggtgttcaggggc
ctgggtttcgtgtccgaccgcgacatcctcgagcacatcatctacgactttgacgacccc
gagatgatggagatgctgaagccctccttggacgaggcgttcgtgatccaggaacagagc
gtggcactcaacttcatcggctcccgcggggccaagccaggtgtcaccaaggagaagcgc
atcaagtacgcacgcgacatcctgcagaaagagatgctgccccatgtgggcgtcagcgac
ttctgcgagaccaagaaggcgtacttcctcgggtacatggtgcaccgcctgcttctcgcg
gcgttgggccggcgggaactggacgaccgcgatcactacggcaacaagcggcttgacctg
gcggggccgctgctcgcgttcctcttcctcgggctgtttaaaactctggggaaagaggtc
cgaatatatgctcagaagtttatcgatcgaggcaaggatttcaacctagaacttgccatc
aagactcggatcatcacggacggactcaagtactcgctggcgaccggaaactggggagac
cagaagaaggctcaccaggctcgtgcgggcgtctcccaggtgctcaaccggctcacgtac
gcctccacgctgtctcacctgcggcgcctaaactcgccgtgcgaccgcggcagcaagctg
gccaaaccgcggcagctccacaacaccctgtgggggatgatttgtcctgccgagactcct
gagggccatgccgtgggtctcgtgaagaacctggccctcatggcctacatctcggtgggc
tcccagccctcccccatcctcgagttcctggaggagtggagcatggagaacctcgaggag
atctccccgtcggccatcgcagatgcaaccaagatctttgtaaacggatgctgggtcgga
atacacaaggaccccgagcagctcatgacaacgctgagaaagctacgccgccaaatggac
atcatcgtgtcggaggtgtccatggtgcgtgacatccgggagcgggagatccgcatccac
acggacgccggccgcatctgccgcccgctgctcattgtggagaagcagcggctgcttctc
aagcgcaggcacatcgagcagctcaaggagcgcgagtacaacggatacagctggcaggag
ctggtggcgagcggcgtggtggagtacatcgacacactggaggaggagagcgccatgatc
gccatgagccccgacgacctgcaggagcgtggcgtggcctactgctgcacctacacgcac
tgcgaggtgcacccggccatgatcctgggcgtgtgcgcctccatcatcccctttcccgac
cacaaccagtcccccaggaacacgtaccagtcagccatgggcaagcaggcgatgggcgtg
tacatcaccaactaccacgtgcgcatggacacgctggcgcacgtgctctactacccgcag
aagccgctcgtcaccacgcgctccatggagtacctgaggttccgagagctgcccgcgggc
atcaactccatcgtggcgatcgcctcttacacgggctacaaccaggaagactccatcatc
atgaaccgctcagccgtggaaaggggatacttccgctctgtgttttatcgctcgtacacg
gaccaggagtcgaagaggagctacgaccaggaggaggtgtttgagaagcccacgagggag
acctgccaagggatgcgccacgcgatctacgacaagctggatgacgatgggctcgtctcg
ccgggcgtgcgcgtctctggcgacgacgtcatcattggcaagacggcgtcgctgccggtc
acggacgatgaactggactcggtggcgacgcgcttcgtgaagcgcgacaccagcaccttc
ctgcgcagcagcgagaccggcatcgtggaccaggtcatggtgaccctcaaccaggatggg
tacaagttcaccaagattcgggttcgttcggtgcgcatccctcagatcggagacaagttt
gcgagtcggcacgggcagaagggaacctgcggcatccaatatcgtcaggaggacatgccc
ttcacctgtgaaggactatctccggacatcatcattaatccccacgccatcccttccaga
atgaccatcgggcacatgatcgagtgcatccaggggaaggtgtcggcgaacaagggcgag
atcggggatgcgacgcccttcaatgacacggtgaacgtgcagaaggtatccaacctcctg
caggagtacggctaccacctccgcggcaacgaggtcttgtacaatggcttcacgggccgt
aagatcacctctcagatcttcatcggccccacctactaccagcgcctcaagcacatggtg
gacgataagatccactcacgcgcccggggccccgtgcagatcctcgtgcgacagcccatg
gaggggaggtctcgggacggaggcctgaggttcggcgagatggagcgcgactgccagatc
gcgcacggcgccgcccagttcctgcaggagcggctgttcgaggtctctgacccctaccag
gtgcacgtgtgcaacctgtgtggcctcatggccatcgccaacacgcgcacgcacacctac
gagtgccgcgcctgccgcaacaagacccagatgtcgctggtgcgcctgccctacgcctgc
aagctgctcttccaggagctcctgtccatgagcattgcgccacggatgatggtcacatga
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integrated database retrieval system
