Petromyzon marinus (sea lamprey): 116953038
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Entry
116953038 CDS
T09614
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03082
ATP-dependent chromatin remodeling
pmrn03083
Polycomb repressive complex
pmrn04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116953038
03083 Polycomb repressive complex
116953038
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
116953038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116953038
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
116953038
Histone modification proteins
HAT complexes
HATB complex
116953038
HDAC complexes
Sin3A-HDAC complex
116953038
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
116953038
PRC2.2
116953038
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
116953038
Heterochromatin formation proteins
Other heterochromatin formation proteins
116953038
Chromatin remodeling factors
NuRD complex
116953038
NuRF complex
116953038
NuRF complex (fruit fly)
116953038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_RIG_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
AftA_C
Beta-prop_SPT8
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
116953038
NCBI-ProteinID:
XP_032828762
UniProt:
A0AAJ7U304
LinkDB
All DBs
Position
49:complement(7960050..7969846)
Genome browser
AA seq
434 aa
AA seq
DB search
MADKEVAMDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLILGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVGTKIEVEIK
INHEGEVNRARYMPQNPYIIATKTPTSEVLVFDYTKHPSVPDPSGECNPDLRLRGHQKEG
YGLSWNPNLSGHLLSASDDHDSTRQTVCLWDISGTPREGKVVEAKTIFTGHTAVVEDVSW
HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD
QTVALWDLRNLKLKLHSFESHRDEIFQVRRAVQWSPHNETILASSGTDRRLNVWDLSKIG
EEQAAEDVEDGPPELLFVHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYND
EDTEPGVADVDTKA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaggaagtggcgatggacgatgcggtggaggagcgtgtcatcaatgaggag
tacaaaatctggaagaagaacacaccattcctgtatgacctggtgatgacgcacgctctc
gagtggccgagcctcaccgcccagtggcttcccgacgtcacccggccggagggcaaggac
tacagcgtccatcgcttaatcctcggcacacacacatctgacgagcagaaccacctggtg
atcgccagcgtgcagctgcccaacgacgacgcccagtttgacgcctcgcactacgacagc
gagaaaggggagtttggaggttttggctctgtgggaacaaaaatcgaggtggagatcaaa
ataaaccacgaaggggaggtgaaccgagcacggtacatgccacagaacccctacatcatc
gccaccaagacgcccacaagcgaggtgctcgtctttgactacaccaagcacccatcagtg
ccagaccccagcggagagtgcaaccctgaccttcgtctgcgcggccaccagaaggagggc
tacggcctctcgtggaaccccaacctgagcggtcacctcctgagcgcgtccgacgaccat
gattccacccggcagacggtgtgcttgtgggacatcagtgggacgccgcgtgagggcaag
gtggtggaggccaagaccatcttcacggggcacacggccgtggtggaggacgtctcctgg
catctgctgcacgagtcactgtttggctccgtcgccgacgaccagaagctcatgatctgg
gacacacggtctaacaacacgtccaagcctagccactcagtggacgcacacacggctgag
gtcaattgcctctccttcaacccctacagcgagttcatcctcgccactggctccgccgat
cagaccgtggctctgtgggatctccggaacttgaaattgaaacttcactcctttgagtcg
caccgtgacgaaatcttccaggtgcggagagcggtgcagtggtcgcctcacaacgagacc
atcttggcttcgagcggcacagaccgcagactcaacgtctgggacctcagtaaaattgga
gaggagcaggctgctgaggatgttgaagacggtccaccggagctgctgtttgtccacggt
ggacacacggccaagatctcggatttctcctggaaccccaatgaaccgtgggtcatatgc
tccgtctccgaggacaacatcatgcaagtgtggcaaatggcggagaacatttacaatgac
gaagacaccgaacctggcgttgccgacgtcgacacgaaagcctga
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