Petromyzon marinus (sea lamprey): 116953131
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Entry
116953131 CDS
T09614
Name
(RefSeq) tripartite motif-containing protein 54-like
KO
K10653
tripartite motif-containing protein 54
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116953131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116953131
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116953131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-RING_6
zf-C3HC4_3
zf-Nse
Sina_RING
Zn_ribbon_FGT1_2
CYP38_PsbQ-like
DUF3825
AAA_15
zf-RING_11
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
116953131
NCBI-ProteinID:
XP_032828895
UniProt:
A0AAJ7U375
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All DBs
Position
3:9428278..9447798
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AA seq
428 aa
AA seq
DB search
MDFSPGFRDAQAMDNLEKQLTCPICLEMFTKPVVILPCQHNLCRKCANDIFQASNPFWQS
RSSGVGSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTKPMKKTDQPMCE
EHEDERINIYCITCGVPTCSMCKVFGAHTGCEVAPLGTVYKKQKGDLSDGIALLVAGNDR
VQAVIGQMEETCKALEANSRRQKQMLCEQFDGLYAVLEHRKQEMLQAVTREQDERMQRLR
THMRQYGEHLEVASKLVENALQSMEEPEMALFLQNAKPLIQKIIESSQANHIQKMEPGFE
NMDRFMASFEQEEALLRRITFLSTSGGGGGEKGDEEEEEEEVVVEEVVYTEGEDGQADDS
VEQGAGAVGVGVQAGPSGVKGVTGEGTRAPREDGEPQAALDPHLADASTGGAPSRHVFSF
PWLNPGKH
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggactttagtccgggattccgggatgcgcaggcgatggacaatctggagaagcagctg
acgtgtcccatctgcctggagatgttcaccaagcccgtggtcatccttccgtgtcaacac
aacctgtgccgcaagtgcgccaacgacatcttccaggcgtcgaacccgttctggcagtct
cggagctcgggcgtgggctccgggggtcgcttccgctgcccgtcgtgccggcacgaggtg
gtgctggaccgacacggggtctacgggctccagcgcaacctcctcgtggagaacatcatc
gacatctacaagcaggagtccactaagcccatgaagaagacggaccagccgatgtgcgag
gagcacgaggacgagcggatcaacatctactgcatcacgtgcggcgtgcccacctgctcc
atgtgcaaggtgttcggggcccacacgggatgcgaggtggcgccactgggcaccgtctac
aagaagcagaagggcgacctgagcgacgggatcgccctgctcgtcgccggaaacgaccgc
gtgcaggcggtcatcggacagatggaggagacctgcaaggcgctggaggcgaacagccgc
cgccagaagcagatgctgtgcgagcagtttgacgggctgtacgccgtgctggagcaccgc
aagcaggagatgctgcaggcggtgacgcgcgagcaggacgagcgcatgcagcgcctgcgc
acccacatgcggcagtacggcgagcacctggaagtggcctccaagctcgtggagaacgcc
ctgcagtccatggaggagcccgagatggcactcttcctgcagaatgccaagccactcatt
caaaagatcatcgagtcgtcccaggcgaaccacatccagaagatggagccgggcttcgag
aacatggaccgattcatggccagcttcgagcaggaggaggccctgctgaggaggatcacc
ttcctgagcacgagtggcggaggcggaggtgagaagggagacgaggaggaggaggaggag
gaggtggtggtggaggaggtggtgtacacggagggggaggatgggcaagcggacgactcg
gtcgagcagggcgccggcgccgttggagtcggggtgcaggcggggcccagcggggtaaag
ggggtgacgggggaagggacgcgagccccccgtgaagacggggagcctcaagctgcgttg
gatccgcatctggccgatgccagcacagggggggctcccagccggcacgtgttctccttc
ccgtggctcaaccctggcaagcactga
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