Petromyzon marinus (sea lamprey): 116953283
Help
Entry
116953283 CDS
T09614
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116953283
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116953283
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116953283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
Linker_histone
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
PHD
zf-RING_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
116953283
NCBI-ProteinID:
XP_032829241
UniProt:
A0AAJ7U3X8
LinkDB
All DBs
Position
51:complement(4879005..4973389)
Genome browser
AA seq
1813 aa
AA seq
DB search
MNNRRKRSLPVKVDVEKRKVLCWSLQDELVPTAQPEQGDAARLHTEDSDAIAQTSDSATY
SSDVPGRSSDTPGGCSSSAASSAVPAVPATRPSPLRLAVYPQPTAQQEWSAVLLSFELTY
SFADFAAQTTDLPVTVTHDPCAPSQLLCECDSPLVRASATIDLDILFDLAWLQRNKVVTL
YRQPTQPYPCTVTIFVHMLTAGLSHIEILSEGYWKIKKVNQLLQKLLALSHNFPIPEEQH
EEAVTDEALDLQKQNVEALYDYVWEAHSSFLTGTADTASGTDKHVGGCRHAQTNVHSHSC
SLVDADSAPETLSQLNEQISSQSSEGTLLVEAAAQSDSGSSNACDIQHPLLVPQLRPYQC
QAVQWMLKREHVGHDACSTGGEKKLHPLWKEFSTIDGQTLYCNYYTGSIIKDRPEAAPEC
PGGILADEMGLGKTIEVLALILAHPRPNMAATSELLPSGVKVNYYIPPPETEKVKEKIKS
SAGSPNKPAVSAAGLRTMIVEAFRKAKGRKGVSMSALYRHLSASCGYDAVQKRKAVQSAV
RAMLDAGTLQHVKGQGLGGTFRVSKSYREPVAGLTMSARKARAAPLEKTVTDAATSPSVP
ADGEEQNSTGDVGAGGDAEAAEDKTNIVLRDAPDSAGIVPLSPVTELGIPATLDMPRTAE
EAEFDGTSRDHNYALGGAKVNKGNGVAVSDVDRTLNSTKQAANQEREAPPAMKSGGGTEM
GVHVEMEPRTPVPIFPFNKKDYRFECVCGELGLSDFKPRVQCMSCGLWQHAACVNYSTAL
LQAQEGTGAIGGRQQQQQKEEQKEDEEAEGGSSGERHLPFHCAHCLVAMEPTLSGATLIV
SPSSISHQWVDEINRHIRSCTLRVLVYNGVKRDGFVQPRKLAQQDVVITTYDVLRSELSY
VDLPYCNRGVGSAGGVDSLLSSEGGRRFRQGKRYMALPSPLVAVHWWRVCLDEAQMVERT
TAKAAEMALRLSSVNRWCVTGTPVQRGLEDLYGLVLFLGVEPFWVRHWWERLLYRPYVRG
DPTPLYRLVSAITWRSSKKHVIDQIELPPQTEDTHWLRFSPVEQHFYQRQHELCSQDALV
KLRKLPDWSVRLSALERRTVSSLLTPLLRLRQACCHPQVVRGEFLPLQKSTMTMEELLCS
LQRKCKTECEEAHRQLVCALNGLAGIHIINGEIVDAVDKYREVLQSSEEHKEKLKTDSLQ
RLHATHNLIELLGRHRAGIAPTLRDDRLQEEAEQLRHRYMSKYEAEVREAHAALQPVAVT
IRDTAHKVNGGAAGGVWWLDVIAHALRSGQEEELLSRVQNELSSNTKHMPHAYSMADKFR
DARGLQLLLSGQLDALRSAREAVRSAVRGLEATPSPRLVLSATVCHLRAQRLPRNSCPFC
KADELFTEYESKLFLQNAKGQAAVWEELISEEGGSVENLRPATGRGLWALSETERALRAL
LAFARATRHPAAVLEEGGYAMDLFDAWKKEYKLLHEYWMMLRNRVSAVDEIAMATERFQV
LQPDEDRPDPALPHIIEPGQVEQQRMKLLNDKALAASQLRKKLGQMLYLSNLEKSQDKSG
QLNPDPCPICSRNFGKQWVVLQCGHCFCNECTAIQMAQYSVGSQRSAIRCAVCRHTTLHH
EVSYVSTVGDGDQADDVTVKGSHSTKVEAVIRELMKIHMSDPEAKSLVFSTWQDVLDIIG
KALKKNGIYFAQINGIHRFQENLSAFKHDPGTNVLLLPLHTGSNGLNIIEATHVILVEPI
LNPATEMQAIGRVHRIGQTRPTVVHRFAVKSTIEEKMVAMLKSAEKISLPLSRPQSDASI
WTVTDLADLFADE
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgaataaccgaagaaagcgctcgttgcctgtcaaggtggacgtggagaaaagaaaagtt
ctctgctggagtttgcaggatgagcttgttcctacagctcagccagaacaaggagatgct
gctcggttgcataccgaagactcggatgccattgcacagacctcggactctgcgacgtac
agcagcgacgttcccggtcgcagctcagacactcccggtggatgctcatcatcggctgca
tcatcggctgttccggctgtcccagccactcggccttcacctctgcgtctcgctgtgtat
ccccagccaacagcgcagcaagaatggagtgccgttctgctgtcgtttgagctcacgtac
tcatttgctgactttgctgcccagacaactgacctgccagtgacggtgacccacgaccca
tgcgctccctctcaattgctgtgcgagtgcgactcgccgttggtgcgtgccagtgcaacg
attgacctggacattctgtttgatcttgcctggctgcagcgaaacaaagtcgtcaccctt
tatcgacaaccaacacagccgtatccttgcaccgtcacgatctttgtccacatgttgaca
gcaggactgtcccacattgagattctcagtgagggttactggaaaataaaaaaggtcaac
cagctgctgcaaaagctattggcactttctcataacttcccaattcctgaggagcagcat
gaagaggctgtgacagatgaagctttggacctccagaaacagaatgtggaagcgctgtac
gactacgtgtgggaggcccacagttcctttcttactggcactgctgacactgccagtggc
actgacaagcatgtggggggttgccggcatgcacaaacaaacgtgcactctcactcatgt
tcactcgtggatgccgactctgcacctgagaccttgtctcagctgaatgagcaaataagt
tcccaaagctcggagggaaccttgttggtagaggcagcagcacagagcgatagcgggagc
tcaaacgcctgcgacatccagcacccactgctggtgccacagctccgcccttatcaatgt
caggccgtgcagtggatgctgaaaagggagcacgttggtcacgatgcttgctccacagga
ggtgaaaagaagttgcatccactgtggaaggaattctcaaccattgatggtcaaacattg
tactgcaattattatactggcagcatcatcaaggatcgtccagaggcggctcccgaatgt
ccaggaggcatcttggccgatgagatgggtctgggcaaaaccatagaggttctggctctt
attctggcccatccaagacctaacatggcagcaactagcgagctcctccccagtggtgtt
aaagttaactactacattcctcctcctgagacggaaaaagtgaaagagaaaattaagtcg
agtgccggatctcctaacaagccagctgtcagtgcagcagggctcaggaccatgatcgtc
gaggcgttccgcaaggctaagggccgcaagggcgtgtccatgagcgccttgtatcgccac
ctgtcggcctcctgcggctacgacgccgtgcagaagcggaaggcggtgcagagcgccgtg
cgggccatgctggacgccggcacgctgcagcacgtcaaggggcagggtctcgggggaacc
ttccgcgtcagcaagagctacagagagcctgtcgctgggctcaccatgagcgcgcgcaag
gcaagggccgcgcctttggaaaagacagtgacagacgctgcaacgtcgccatctgtacca
gcagatggagaagagcaaaactccacgggggatgtgggtgcaggtggggatgccgaggca
gcagaagacaagacaaacattgttttacgcgacgcccccgatagtgcgggaattgtacct
ctgtcacctgtgacagaattggggattccggcgacgttagatatgccaaggacggccgag
gaagccgagtttgacggcacaagccgcgatcacaattacgctctgggcggagctaaggtc
aacaaaggtaatggtgtggcagtgagcgatgtcgacaggacacttaattccacaaagcag
gctgccaaccaggagagggaggcaccccctgccatgaagtcaggcggtggtaccgagatg
ggcgttcatgtggagatggagccaaggacgcccgtgcccattttccccttcaacaagaag
gactaccggttcgagtgcgtgtgcggcgagctgggcttgagcgacttcaagccgcgcgtg
cagtgcatgagctgcgggctgtggcagcacgccgcctgtgtcaactacagcacggcactg
ctgcaggcgcaggaaggcaccggcgcaattggcgggcgacagcaacagcagcagaaagag
gaacagaaggaggatgaggaggcggagggcggtagcagtggcgagcgtcatctgccattc
cactgcgctcactgcctggtggcgatggagccgaccctgtcaggggccactctgattgtg
tctcccagctcgatcagtcaccagtgggtggacgaaatcaaccggcacatccgctcctgc
accctgcgcgtgctggtgtacaacggggtgaagcgtgacggctttgtgcagccacgtaag
ctggcgcagcaggacgtggtcatcaccacgtacgacgtgctgcgctccgagctcagctac
gtggacctgccctactgcaacagaggagtggggtctgcaggtggtgtggacagcctcttg
tcgtctgagggcggccgccggttccggcagggcaagcgttacatggcgctgccgagcccg
ctggtggccgtgcactggtggagggtttgcctggacgaggcccagatggtggagcgcaca
accgcaaaggctgccgagatggctctgcgtctcagctcggtcaatcgctggtgcgtgact
gggacgcctgtccagcgcggactggaggacctgtacggcctggtgctgttcctgggcgtg
gagccgttctgggtgcgccactggtgggagcggctgctctaccgcccgtacgtgcgtggc
gaccccacgccgctctaccgcctcgtctccgccatcacgtggcgctcgtccaagaagcac
gtcatcgaccagattgagctgcccccgcagacggaggacacgcactggctcaggttctcc
cctgtcgagcagcacttctaccaacgtcaacacgagctctgctcccaggatgctctggtc
aagctgcgcaagctgccggactggtcggtgcggctgagcgccctggagcggcgcaccgtg
tccagtttgctgaccccgctgctgcggctacgccaggcgtgctgccacccccaggtggtg
cgtggagagttcctgccgctgcagaagagcacgatgaccatggaggagctgctgtgctcg
ctgcagaggaagtgcaagacggagtgcgaggaagcgcaccgccagctggtgtgcgctctc
aacggcctggccggcatccacatcattaacggggagattgtggatgccgtcgacaagtat
agagaggtgctccagtcctccgaggaacacaaagaaaaactcaagacggactctctgcag
aggctgcacgccacgcacaacctcatcgaactcctgggccggcatcgcgccggcatcgcg
cccacgctgagggacgatcggctgcaggaagaggcggagcagctgaggcaccgctacatg
agcaagtacgaagcggaggtgcgggaagctcacgccgccctgcagcccgtcgccgtcact
atccgagacaccgcacacaaggtgaacggcggcgcggcggggggcgtgtggtggctggac
gtgatagcgcacgcgctgcgctcgggacaggaggaggagctgctgtcgcgcgtgcagaac
gagctgtcttccaacaccaagcacatgccgcacgcctactccatggcggacaagttccgg
gatgcacgggggctgcagctgctgctgtcggggcagctggacgcgctgcgctcggcgcgg
gaggcggtgcgctccgccgtgcgcgggctggaagccacgccctcgccgcgactcgtgctc
tccgccaccgtctgccacctccgcgctcagcgcctgccccgcaactcgtgccctttctgc
aaggcggatgagctgttcacagaatacgaatccaagctgttcctgcagaacgccaagggt
caggcggccgtgtgggaggagctgatcagcgaggagggcggctccgtggagaacctgcgc
ccggcgacgggccgcggcctgtgggccctcagcgagacggagcgcgccctgcgggccctc
ctggccttcgctcgcgcaacccgccaccccgcggccgtgctcgaggagggcggctacgct
atggatctcttcgacgcctggaagaaggagtacaagttgctgcatgaatactggatgatg
ctgcgcaatcgtgtgtcggccgtggatgagatcgccatggcgacagaaaggttccaggtg
ctgcagccggatgaggataggccggatccggcactcccacacatcatcgagccgggccag
gtggagcagcagaggatgaaacttttgaacgataaagcgctcgccgcttcccagctccgc
aaaaaacttggacagatgctgtacctgagcaacctggagaagtcgcaggacaagtctgga
caactgaacccggatccctgccccatctgttcccggaattttggaaaacagtgggtggtg
ctgcagtgcggacactgcttctgcaacgaatgcacggccatccagatggcgcagtacagc
gtggggtcgcagcgctcggccatccgctgcgccgtgtgccggcacaccacgctccaccac
gaggtgtcctacgtgtccacggtgggggacggggaccaggcggacgacgtcaccgtcaag
ggcagccactccacgaaggttgaggcggtcatacgggagctaatgaagattcacatgtcg
gatcccgaagccaagtctctggtcttctccacgtggcaggacgtgctggacattatcggc
aaggccctcaaaaagaacggcatctactttgcacagatcaatggtatccaccgcttccag
gagaacctgagtgcgttcaagcacgacccgggcaccaacgtgctgctgcttccacttcac
acgggctccaacgggctcaacatcatcgaggccacccacgtcatccttgtggagcccatc
ctcaacccggccaccgagatgcaggccataggcagggtgcaccgcatcgggcagacgcgg
ccaacagtggtgcacagatttgccgtgaagtccacaatcgaggagaagatggtggccatg
ctgaaatcggcagaaaagatatctctgcctctgagccgaccacagtcggacgcctccatc
tggaccgtcaccgacctggctgacctcttcgccgatgagtaa
DBGET
integrated database retrieval system
