Petromyzon marinus (sea lamprey): 116953327
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Entry
116953327 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03420
Nucleotide excision repair
pmrn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116953327
09124 Replication and repair
03420 Nucleotide excision repair
116953327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116953327
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116953327
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116953327
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
116953327
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
Beta-prop_LRRK2
WDR55
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
116953327
NCBI-ProteinID:
XP_032829315
UniProt:
A0AAJ7U404
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Position
51:complement(10936908..10949389)
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AA seq
357 aa
AA seq
DB search
MLGLLSSRRNGADEPPRLRVGESTRRVFNLELSSERDVECVHSSGVNVLDIDQAENKYML
SGGADGVIAIYNLENVSQKPQYTCKAICTVGRSHAHVHQYSVETVQWYTHDTGMFLSSSF
DKTLKAWDTNALEPAEIYIFSEKVYCHHXSPIAMQHSLIAVGTSGSKVQLCDLRTGSSTR
ILNGHRNAVLAARWSTRHEFVLATGRYQPSERMPHHTEIKIVHIQRPCTMNPGNPHACIR
KVNYGRVSNGSRKGVKFAVSADCSPDLVFIPMGSHVTAFEIHSGRAHTQLSGHYNKVNCC
EYYSDFQELYSGGNDSNILVWVPYMGRTQPEEEETDKKSGRKQRSGFQDSWSSSDED
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgttgggtctcctgtcgtcgcggcgcaacggagcggacgagccgcccaggctgcgcgtc
ggcgagtccacgcgaagggtgttcaacctggagctgagcagtgagcgggacgtggagtgc
gtgcacagcagtggcgtcaatgtcctcgacatcgaccaagcagaaaataagtatatgctc
tctggaggagctgatggagtgattgccatctacaacctggagaatgtctcccagaaacct
cagtacacatgcaaggccatctgcacagtgggcaggtcccatgcacatgtgcaccagtac
agtgtggagacggtgcagtggtacacccacgacacaggaatgtttctgtcgagctccttt
gacaagacactcaaggcatgggacaccaatgctctggagccggcagaaatttacatattt
tcggaaaaggtttattgtcaccatnngtctccaattgcaatgcagcactccctaattgct
gttggaaccagtggcagcaaagtgcagctgtgtgacctgagaacgggctcgagcactcgc
atcctgaacggtcaccggaacgcggtgctcgcagctcgctggtcgacgcggcacgagttt
gtcctggctactggaaggtaccagccaagtgagcgcatgccgcaccatactgaaataaaa
attgttcacattcagcgcccttgcacaatgaatcctggaaacccccacgcatgtattaga
aaagtgaactacggccgggtcagcaacggttcccgcaaaggggtgaagttcgctgtgtcg
gcagactgctcgccggacctcgtgtttattccgatgggcagtcacgtaactgcgtttgag
atccactccgggcgggcacacacccagctcagtggccactacaacaaggtcaactgctgt
gaatattattcagacttccaggagctgtatagtggcggtaatgacagtaacatcctggtc
tgggtgccctacatgggcaggactcaaccggaggaggaagaaacagacaagaagtctgga
agaaagcagcgcagtggcttccaggattcctggagcagtagcgatgaagattaa
DBGET
integrated database retrieval system
