Petromyzon marinus (sea lamprey): 116953503
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Entry
116953503 CDS
T09614
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116953503 (YTHDC2)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116953503 (YTHDC2)
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116953503 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
Ank
AAA_22
AAA_19
Ank_3
ATPase
Ank_5
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116953503
NCBI-ProteinID:
XP_032829651
UniProt:
A0AAJ7U6P6
LinkDB
All DBs
Position
52:1227083..1281769
Genome browser
AA seq
1497 aa
AA seq
DB search
MSCPRAASMQPVGTPRGGRGNQSGGRGKGLQNIKVSEEVKIAVNVAMERFRYSDDKELEF
PSSLTKTERAFVHRLCQSMGLISRSRNKGLMRCLTVRKKESAEAAGAEMSFVLSHPARHA
AHALLQRFPVTSKERTELLPRTDRAPSGAGSDPGVRHEMSRLSGRLNNGIPQVPPPRGRS
ELEAFRQTLPVAEFQEQLLGTIAKSNILLVLGETGSGKTTQIPQYILDESTRLGWPCRVL
CTQPRRISAIAVAERVAAERGEGVGQTVGYQIRLESRVSPKTLLTFCTNGVLLRTLMSGD
SAMSTVTHIIVDEVHERDRFCDFLLIKLRDILERQCNLRVVLMSASLNVSLFSKYFSGCP
IIRLPGRLFEVKRLFLEDILRTTGYKSKEMERYQKEKDKLESQQNKLSEWYKAKETGSSV
PVRSASAACLADHTRMLNDEGESAFVQEAERDGSNLEPWLVKEMDACITNLWMHRDEDAF
TQLLHLLLSERVSVDYRHSETTATPLMVAAGHGFIGIVEQLLRLGANVNVKASNGMNAFD
WAKNFHHLDVVELMESFVASVGEAGPDESTLANTSTELSPEDRELLSVYHHTFDDDKVDL
DLILHLLNQICQGSTDGAVLIFLPGYDEIITLRDLILCDDKRFAEQSHKYHVFTLHSNMQ
TCDQRRVLKSVPPGTRKIILSTNIAESSITVNDVVFVIDSGKVKEKSYDALTSVTMLKTV
WISQASSLQRRGRAGRCRPGICFHLFSKVRFQNMLEFQTPELLREPLQELCLHTKLLAPT
CMPIAEFLAKAPDPPPNLIVRNALQILKAIDAMDNWEDLTELGHHLSDLPVEPHLGKMVL
YGVVLKCLDPVLTIACSLAYRDPFTLPSQPAHKRAAAYSRKKLAASTFSDHMALLRAFQA
WQKACGDGWERSFCERSFLSQGTMEMIFGMRSQLLGQLRASGFVRARGGGDIRDLNTNSE
NWPVVKAALVAGLYPNVIHVDRTTQTLTTQLERRVRLHPSSVLDQPGFKKPSPSEEGIPE
GLAALPTDWLVFGEMTRVHRLASARCVTAVSPVAVALFAGPSRLPASALQGPSSTHVEGI
PYDSSDSEMEEKPSVKTAVLHLDEWINFKLDPEAANLLLQLRQKWHTLFVRRMRAPSRAW
SQADEATVSAVIAALACEDEALGLQQPTGIGQRPRPIVPEEPHFAPSTTARGAAARFSPP
APAVAASWKADRSRKSGGGGSNGGGGGGGAGGGGGGGGGGGAESTEELLVTEMSRVVLPP
PGFQQLKPQQQEPPLLDRRSAAHRGNGPVAAAAAAPPVAASPPAAAKGPKPPSPRRALAT
VRYFVMKSSNMRNLELSQQRGIWSTTPANEQKLNRAFLLCPVVYLVFSVQGSGHFQGYAR
MVSPIGQERCQEWGSPALGGVFRVLWLYLGGIPFQQVQHLLNPWNDNKRVQISRDGQELE
TQVGEQLLKLWDRWPRAGGGGGGGGGGGGGGGGGGGGGRDLEQQAAASQSPLQMPRY
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcccacgcgcagcctccatgcagcccgtaggaactccccgcggcggcagaggg
aatcaaagtggcggccgcggcaaaggtctgcagaacatcaaggtgagcgaggaggtgaag
atcgcagtgaacgtcgcgatggagcgcttccgctacagcgacgataaagagctggagttc
ccttcctcgctgacaaaaacggagcgggccttcgtccaccgcctctgccagtcgatggga
ctcatctcgaggagtcggaacaaggggctgatgcggtgcctgaccgtgcggaagaaggag
agcgcggaggcggcgggcgccgagatgtcgtttgtgctgtcgcacccggcgcgccacgcc
gcccacgcgctgctgcagcgcttccccgtcaccagcaaggagcgcaccgagctgctgccc
cgcacggaccgagcgccgtctggtgccggctcagacccaggggtgagacacgagatgagc
aggctgagcgggcggctcaacaacgggatccctcaggttcctccaccgcgggggcgctcg
gagctggaggcgttccgccagaccctccccgtggccgagttccaagagcagctgctgggc
accatcgccaagtccaacatcctgctggtgctgggcgagaccggctctggcaaaaccacg
cagatccctcagtacatcctggacgagagcacccgcctggggtggccatgccgcgtgctg
tgcacgcagccgcgccgaatctctgccatcgccgtggccgagagagtggcggcagagcga
ggggagggcgtcggccagaccgtgggctaccagatccggctggagagcagggtctcgcca
aagacacttctcacgttctgcaccaacggcgtgctgctgaggaccctcatgtccggagac
agcgccatgtctactgttacgcacatcatcgtggacgaggtccatgaacgcgaccgcttc
tgcgacttcctgctcatcaagctgcgcgatattctggagcggcagtgcaacctccgcgtc
gtgctgatgagcgcctccctcaacgtctcgctcttctccaagtacttcagcggctgcccc
atcatccgcttgcccgggaggctgttcgaggtgaagcggctctttctggaggacatcctg
cgcaccacgggttacaagtctaaggagatggagagataccagaaggagaaagataaactg
gagagccagcagaacaagctgagcgaatggtacaaggcgaaggagacgggatcgagcgtg
ccagtacgcagtgccagcgccgcatgcctcgcagatcacaccaggatgctcaacgacgaa
ggggagagcgccttcgtacaggaggcggagcgcgatggctccaacctggagccgtggctc
gtcaaggagatggacgcgtgcatcaccaacctgtggatgcatcgggacgaggacgccttc
acgcagctgctgcacctgctgctcagcgagcgcgtcagcgtcgactacaggcacagcgag
acgaccgccacgccgctgatggtggccgcaggacatggcttcatcggcatcgtggagcag
ctgctccggttgggggccaacgtcaacgtgaaggcctccaacggcatgaacgctttcgac
tgggcgaagaattttcatcatttggacgtggtggagctcatggaatcgtttgtggcttcg
gtgggcgaggcggggcctgatgaaagcacactggcaaacaccagcactgagctgagcccc
gaggaccgcgagctgctcagcgtctaccaccacacctttgacgacgacaaggtggacctc
gatctcatcctgcacctcctcaaccagatctgccagggctccactgatggagccgtgctg
atttttttgccgggctacgatgagatcatcacgctgcgggacctcattctctgcgacgac
aaaagatttgcggagcagagccacaagtaccacgtgttcacccttcactccaacatgcag
acgtgtgaccagaggagagtgctcaagagcgtgccgccaggaacccgcaaaattatcctg
tcgacgaatatagcggagagcagcatcacggtgaacgacgtggtgttcgtcatcgactcg
gggaaagtgaaggagaaatcgtacgacgcgctcacctcagtcaccatgctcaagacggtc
tggatttcccaggccagcagcctccagaggaggggcagggctgggaggtgtcgccccggc
atctgcttccacctgttcagcaaggtgcgcttccagaacatgctggagttccagaccccc
gagctgcttcgagagccactgcaggagctgtgcctgcacaccaagctgctcgcgccgacc
tgcatgccgatcgccgagttcctggccaaggctccggatcccccgcccaatctcatcgtc
cgcaacgccctgcagatcctcaaggcgatcgacgcgatggacaactgggaggacttgacg
gaactgggtcatcacctatcagacctgcccgtggagcctcacctgggcaagatggtgctc
tacggcgtcgtgctcaagtgcctcgacccggtgctcaccatcgcctgctcgctcgcctac
cgcgaccccttcacgctgcccagccagccggcgcacaaacgcgccgccgcctactcgcgc
aagaagctcgccgcctccacgttcagcgatcacatggccctgctccgggcattccaggcg
tggcagaaggcgtgcggcgacggctgggagcgctcgttctgcgagcgaagcttcctgagc
cagggcaccatggagatgatcttcggcatgaggtcgcagctgttgggtcagctgcgtgcg
tccggtttcgtgcgggcgagaggcgggggcgacatccgcgacctcaacacgaactcggag
aactggccggtggtgaaggcggcgctggtggcggggctctaccccaacgtgatccacgtg
gatcgcaccacccaaacgctcaccacgcagctcgagcgtagggtgcgcctccacccttcc
tccgtgctcgaccagcccggcttcaagaagccctccccctcggaggagggcattcccgag
ggattggcggcgcttcccaccgactggctggtgttcggcgagatgacgcgagtgcaccgc
ctggcaagcgctcgctgcgtcacggccgtgagccccgtggcggtggctctgttcgccggc
ccctctcgccttcccgcctccgccctccagggaccgtcatcgacgcacgtggaagggatt
ccctacgatagcagcgacagcgagatggaggagaagccgtcggtgaaaacggccgttctg
catctcgacgagtggatcaacttcaagttggacccagaggcggcgaacctgctgctgcag
ctgcggcagaagtggcacactctgttcgtgcgccgcatgcgggcgccgtcgcgcgcctgg
tcgcaggcggacgaggcgacggtcagcgccgttattgcggcgctcgcctgcgaggacgag
gccctcggcctgcagcagcccaccggcatcggccagcggccgcggccgatcgttcccgag
gagccgcacttcgcgccgtcgacgacggcgcggggggccgcggcgaggttttcgcccccg
gcacccgcggtggcggcttcgtggaaggccgatcgcagccggaagagtggcggtggtggc
agcaatggcggcggtggtggtggtggagccggtggtggtggtggtggtggtggaggaggt
ggggccgagtcaactgaggagttgctggtgaccgagatgtccagggtggtgctccccccg
ccggggttccagcagctgaagccgcagcagcaggaaccgccgctcctcgatcgtcggtcg
gccgctcacaggggcaacggccccgtcgccgccgccgccgccgctccccctgtcgccgcc
tcaccgcccgccgccgccaagggtccgaagcctccgtctccgcggcgggcgctggcgacc
gtgcgctacttcgtcatgaagagcagcaacatgcgcaacctggagctgtcgcagcagagg
ggcatttggtcgacgacgccggccaacgagcagaaacttaaccgcgcgttcctcttgtgc
cccgtcgtctacctcgtcttctccgtgcagggctccggacacttccagggctacgcacgc
atggtgtcgccgatcggccaggagcggtgccaggagtggggctcccccgcgctgggcgga
gtgttccgggtgctgtggctgtacctgggcgggatcccgttccagcaggtgcagcacctg
ctcaacccgtggaacgacaacaagagggtgcagatcagccgcgacgggcaggagcttgag
actcaggttggagaacagctgctcaagttgtgggacagatggccccgtgccggtggtggt
ggcggtggtgggggcggcggcggtggcggcggcggcggtggcggcggtggtggccgagac
ttggaacagcaggccgctgcaagtcagtcccctctgcagatgccgaggtactaa
DBGET
integrated database retrieval system
