KEGG   Petromyzon marinus (sea lamprey): 116953986
Entry
116953986         CDS       T09614                                 
Symbol
SMU1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
pmrn  Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmrn03041]
    116953986 (SMU1)
Spliceosome [BR:pmrn03041]
 Complex B
  Other components
   Complex B specific factors
    116953986 (SMU1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML WD40_Gbeta WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_ACSF4 NBCH_WD40 Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_Nup120_160 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F LisH_PAC1 DUF7165 VPS8_N LisH LisH_WDR26 FOP_dimer
Other DBs
NCBI-GeneID: 116953986
NCBI-ProteinID: XP_032830279
UniProt: A0AAJ7U6X4
LinkDB
Position
1:17874731..17888939
AA seq 513 aa
MSIEIESPDVVRLIMQYLKENNLQRTLAVLQEETSVSLNTVDSIDSFVSEINNGHWDTVL
QAIQSLKLPDKTLVDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYVHLENL
LARSYFDPREAYPDGSSKEKRRAAIALALAGEVSVVPPARLMALLGQALKWQQHQGLLPP
GTTIDLFRGKAAVKDEEEEKFPTQLSRHIKFGQKSHVECGRFSPDGQYLITGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCLAFSRDSEMLASGGQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFSKDSSQILSAAFDQIIRVHGLKSGKTLKEFRGHTSFVNEAIFTQD
GHHVISASSDGTVKVWSVKTTECVNTFKSLGGTTGSDITVNSVHAVPKNAEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCCLSPRGEWIYCVGEDFVLYCFSVVTGKLERTL
TVHEKDVIGITHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtccatcgagatcgagtcacccgatgtggtgcggctaatcatgcagtacctgaaggag
aacaatttgcaacgcacgctagccgtgctgcaggaggagacgtccgtgtccctcaacacg
gtggacagcatcgacagttttgtatcggaaatcaacaatgggcactgggatactgtactg
caggctatacagtccctcaagctgcctgacaaaactctagttgacctctatgagcaggtg
gtgttggagctgattgaactgagagagctgggtgctgcacgctccctgctgaggcaaacc
gaccccatgatcatgttgaaacagacccagcctgaacgctacgtccacttggaaaacctg
cttgcccgctcgtattttgacccccgagaggcatatccggatggtagcagtaaggagaag
aggagggcagccatagctctggccctcgctggggaagtcagcgtggtgcctcctgctcgt
ctcatggctttgcttggacaggcactgaagtggcagcagcaccagggcttgctcccacct
ggcactacaatcgatttgttcagaggaaaagcagctgtcaaggatgaggaggaagagaag
ttccctacacagctcagtcgtcacataaagtttggacaaaaatcacacgtggaatgtggg
agattttcacctgatggacagtacctcatcactggctctgtggatggcttcatcgaagtc
tggaacttcaccactggaaagatcagaaaggacttgaagtaccaagcacaggacaacttt
atgatgatggatgatgctgtactgtgcttggcttttagccgtgacagtgaaatgctggca
tctggtggtcaagatggcaagatcaaggtgtggaagatacagagtgggcagtgtttgcgc
cgtttcgagcgagcacacagcaaaggggtgacatgtgtgagcttttccaaagacagcagc
cagattctaagtgctgcttttgatcaaatcataagggtgcatggcctcaagtctggtaag
actttgaaggagttcagaggtcacacatcatttgtgaacgaagccattttcacccaggat
ggacaccacgttatcagcgcctcttctgatgggactgttaaggtgtggagtgtcaagaca
actgagtgtgtcaacacgttcaagtctttgggtggtacaacaggttctgacatcacagtg
aacagtgtgcatgctgtccccaagaatgccgagcactttgttgtatgcaatcgctccaac
actgtggtcatcatgaacatgcagggacagattgtgaggagtttcagttctggtaagagg
gagggtggtgacttcgtatgctgctgcctgtcaccccgtggagagtggatctactgcgtg
ggtgaagactttgtgctttactgcttcagtgttgtcacaggaaagctggagaggacactg
accgtgcatgagaaagatgttattggaatcactcaccacccacaccagaacctcatcggc
acctacagtgaggatggtcttctgaagctatggaagccttga

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