Petromyzon marinus (sea lamprey): 116953999
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Entry
116953999 CDS
T09614
Symbol
EIF4A3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03013
Nucleocytoplasmic transport
pmrn03015
mRNA surveillance pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116953999 (EIF4A3)
09122 Translation
03013 Nucleocytoplasmic transport
116953999 (EIF4A3)
03015 mRNA surveillance pathway
116953999 (EIF4A3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116953999 (EIF4A3)
03041 Spliceosome [BR:
pmrn03041
]
116953999 (EIF4A3)
03009 Ribosome biogenesis [BR:
pmrn03009
]
116953999 (EIF4A3)
03012 Translation factors [BR:
pmrn03012
]
116953999 (EIF4A3)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116953999 (EIF4A3)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116953999 (EIF4A3)
mRNA cycle factors
Stress granule specific factors
116953999 (EIF4A3)
Spliceosome [BR:
pmrn03041
]
Complex C
Other components
EJC/TREX
116953999 (EIF4A3)
Ribosome biogenesis [BR:
pmrn03009
]
Eukaryotic type
90S particles
Helicases
116953999 (EIF4A3)
Translation factors [BR:
pmrn03012
]
Eukaryotic type
Initiation factors
eIF-4
116953999 (EIF4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
116953999
NCBI-ProteinID:
XP_032830270
UniProt:
A0AAJ7XDF4
LinkDB
All DBs
Position
53:9676688..9693792
Genome browser
AA seq
403 aa
AA seq
DB search
MAAPARPRRVLEEDFSKIEFETSEEVDVTPTFDSMGLREDLLRGIYAYGFEKPSAIQQRA
IKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDTQVRETQALILSPTRELATQIQKVLKA
LGDYMSVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRNLRTRAIKMLVLDE
ADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH
GDMPQKERDTIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS
GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccagcgagaccgcgccgcgtgctcgaggaggacttctccaagatcgagttc
gagacgagcgaggaggtggacgtgacgcccaccttcgactccatggggctgcgcgaggac
ctgctgcgcggcatctacgcctacggttttgagaagccctcggcgatccagcagcgagcc
atcaagcagatcatcaagggccgtgacgtcatcgcacagtctcagtccggtacggggaaa
acggcgaccttctgcgtgtcggtgctccagtgcctggacacccaggtccgggaaacccaa
gccctcatcttgtctccaacaagagagttggccacacaaatacagaaggtgctgaaggcg
ctgggagactacatgagcgttcagtgccactcgtgcatcggcggcaccaacgtgggtgag
gacatccgcaagctggactacgggcagcacgtcgtggccggcacgccgggccgtgtcttc
gacatgatccgtcgcaggaatctgcgcacgcgtgcgataaagatgctggttttggacgaa
gcggacgagatgctcaacaaaggcttcaaggagcagatctacgacgtgtaccgctacctg
cccccggcgacgcaggtgtgcctcatcagcgccacgctgccgcacgagatcctggagatg
acgaacaagttcatgacggaccccatccgcatcctggtcaaacgtgacgagttgaccctg
gagggcatcaagcagttcttcgtggccgtggagcgcgaggagtggaagttcgacaccctg
tgcgacctctacgacacgctcaccatcacccaggccgtcatcttctgcaacaccaagcgc
aaggtggactggctgacggagaagatgcgcgaggcgaacttcacggtgtccagcatgcac
ggggacatgccacagaaggagcgcgacaccatcatgaaggagttccgctccggtgccagc
cgtgtgctgatctccacggacgtgtgggcccgcggtctcgacgtgccccaggtctccctc
atcatcaactacgacctccccaacaatcgcgagctctacatccacaggattggccgatcg
ggccgctacggccgcaaaggtgtggccatcaacttcgtgaagaacgacgacatccgcatc
ctgcgcgacatcgagcagtactactcgacgcagatcgacgagatgcccatgaacgtggcc
gatctcatctga
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