Petromyzon marinus (sea lamprey): 116954710 Help Entry 116954710         CDS       T09614                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K19719   collagen type II alpha Organism pmrn  Petromyzon marinus (sea lamprey) Pathway pmrn04510   Focal adhesion pmrn04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:pmrn00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116954710  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     116954710  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pmrn00536]     116954710 Glycosaminoglycan binding proteins [BR:pmrn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116954710 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Amnionless TILa PSP94 Motif Other DBs NCBI-GeneID:  116954710 NCBI-ProteinID:  XP_032831308 UniProt:  A0AAJ7XFG5 LinkDB All DBs Position 56:complement(4481807..4540223) Genome browser AA seq 1448 aa AA seqDB search MIPRTFWLLAVQALLAATVRCQDDAPLGSCEDEIGQLHDNKDVWKSEPCTLCVCDNGNIL CDDLICEDLMDCANPVIPEGECCPICGDENGAAKLQLTEEPKVEVKPARGGKANPRRPGR PPVPKQPENERRPVIPVPSYPESVGPYAAQMGGGFKTESTEAGAPGPMGPRGPPGLPGPS GPAGSSGAPGEPGEPGASGPTGPVGPVGPPGRAGEDGHPGKSGISGERGVPGSQGARGFP GNPGLSGMRGHKGYDGLDGSKGEPGGVGPKGERGPSGANGAPGLMGPRGLPGERGRSGGA GSAGARGADGAPGPAGPAGPIGGVGVPGFPGGPGNKGEAGPAGAMGASGQQGPAGEPGIG GGIGPAGPPGLRGANGAQGPKGPSGDSGPAGGPGMPGPRGPLGPPGSSGPAGPRGIAGEP GVPGFKGENGAKGTPGASGPAGPAGPSGEEGKNGARGEPGASGPSGAAGERGAPGGRGMP GPGGNAGSIGMPGERGAAGPAGAKGPEGGPGRPGESGIPGARGSTGSPGAAGSEGKPGVS GPVGGDGRPGPPGPSGVRGLPGPNGFPGPAGGAGEAGKPGDRGPSGSAGPRGAPGKDGEG GPAGLAGPVGAVGSRGERGAAGLPGAQGLPGPSGAAGELGRAGSMGSPGDRGGPGPAGAR GEAGIPGERGAPGPAGAAGPRGEAGPAGTDGAKGEVGPAGPAGGAGSPGMMGLPGDRGSG GTPGEKGEKGDGGPAGSSGNPGRDGPRGPDGPVGPPGPLGPGGERGEAGPAGPSGPAGLQ GPPGERGSNGASGAPGFPGPPGSDGQPGARGERGEAGGKGEGGSAGPPGPYGPAGPPGPA GLVGGKGGLGPAGPAGPVGFPGASGAPGGSGPAGLTGPPGGPGPAGKSGPRGPRGDSGPT GRDGSTGPGGPPGPPGERGPAGATGSSGPVGPPGPAGLSGGGGMLGVPGTRGERGGPGGP GPSGAIGRDGAAGPAGERGPDGPSGPAGAPGPAGDAGREGNAGSDGAPGRDGYAGAKGES GDVGLAGAAGASGLMGAPGPSGPAGSTGNRGESGPGGPSGPAGPAGPRGPAGPSGGKGGK GEAGGAGAGGEKGFRGDPGPQGMPGGMGRPGENGGSGAAGPTGPRGIPGSQGPAGRDGHA GNAGTAGGTGPRGPSGSSGPAGPAGPPGPPGPPGPSGGGGGYFYESVQAEVEKGPDPLRF YRGDEAVQEKAVQAQEMEASLKTISGKVDLLQAPDGSRERPARTCRDLHLTHPDLKSGNY WVDPNKGSPIDAMEVWCNMERGHTCVAANPKSAARKGWHSAQGKEQKHIWFGENVQGGFK FTYGDDSLPANTAAVQITFLRLLSREASQKLTYHCRNSVAVSDERGDFGKALLLQGSSEV EIRAQGNSRFTYSVLQDGCKSHTGQWGKAEIEYKSQKTSRLPILDIAPMDIGGPEQEFGI DIGPVCFF NT seq 4347 nt NT seq  +upstreamnt  +downstreamnt atgatcccgaggaccttttggctgctggcggtgcaagcgttattggccgccactgtgaga tgtcaagacgatgcacccctcgggagctgtgaggacgagatcgggcagctgcacgacaac aaggacgtgtggaagtccgaaccgtgcaccctctgcgtctgcgacaatggcaacatcttg tgcgatgacctcatctgcgaggacctgatggactgcgccaaccccgtcatccccgagggg gagtgctgccccatctgcggcgacgaaaacggagctgccaagcttcaactcacggaagag cccaaggtggaggtgaaaccggcacgtgggggcaaggcgaatcctcgccgtcccggtcgg ccacccgtccccaagcagcccgagaatgaaaggcggccggtgattcctgttccttcgtac ccggagtccgttgggccatacgcagctcagatgggcggcggattcaagacggagtcgacg gaggcgggcgcgcccggccccatgggacccagaggaccccctggcctgcctggaccttcg ggcccagccggatcttcgggagccccaggggagcctggagagccaggggcctctggtccc accggccctgttggacccgttgggcccccaggtcgtgctggtgaagacggtcaccccggc aagtctggcatctctggagagcgcggagttcccggttctcagggcgcgcgtggcttcccc ggcaaccccgggctgagcggcatgaggggtcacaagggctacgatggcctggatggaagc aagggcgaacctggcggcgtcggacccaagggtgagcgtggaccatcaggagcgaacgga gctcctggtctcatgggcccccgtggattgcccggcgagaggggacgtagcggtggcgcc ggttctgctggagctcgtggtgctgatggtgcccctggccccgctggacccgcgggcccc attggaggcgtcggtgtccccggcttccccggaggccccggaaacaagggtgaggccggc cccgctggtgctatgggagccagtggacagcagggcccagcgggagagcccggtattggt ggaggcatcggacctgcaggtcctcccggtcttagaggcgccaacggagctcagggaccc aagggaccatcgggagactccggacccgccggtggccccggaatgcccggacctcgtggg cccctcgggccccccggttcgtccggccctgctggacccagaggcattgcaggagagccc ggagtgccgggattcaagggcgagaacggtgccaagggaacgccgggagcatcagggccc gcaggccccgccggcccaagcggagaggaaggcaagaacggcgctcgcggagagcctggc gcctctggaccatctggcgccgctggcgagaggggagctccagggggtcgcggaatgcca gggcctggcggcaacgccggatcaatcggaatgcccggcgagcgtggagcggccggccct gctggagccaagggacctgaaggaggacctgggcgcccaggagaatccggaattcctgga gccaggggttcgaccgggagtcccggagcagctgggtccgagggaaagcctggcgtctct ggccccgtgggaggagatggtcgtcctggccccccaggcccctctggagttcgtggtctc cccggccccaacggattcccagggcccgcaggaggcgctggcgaggctggcaagcccggt gacagaggcccttccggttccgcagggccacgtggggcccctggcaaggatggtgaaggc ggccctgctggcctggcaggtcccgtgggcgctgtgggttcccgtggtgagcgtggcgct gctggtctccctggagcacagggcctgcccggaccctcaggggcggctggagagctgggt cgcgccggcagcatgggaagtcctggtgacaggggtggtcctggacctgctggtgcccgg ggagaggctggaatccccggagagcgtggagccccaggccccgctggcgccgcaggcccc agaggagaggctggacctgcggggacggacggagcaaagggtgaggttggccctgcaggc ccagccggaggagctggcagcccgggcatgatgggactccctggagaccgagggtcgggt ggaactcccggagagaaaggagaaaagggtgatggtggcccagcaggaagttcaggcaac cctgggagggatggccctcgtggtccagatggtcccgttggtcctccaggtcccctgggt cccggtggagagagaggtgaagctggtcccgccggcccatctgggcccgcaggtctccag ggaccccctggtgagcgtggatcgaacggtgcttctggtgctcctggcttccccggaccc cctggtagcgatgggcagcccggcgcccgtggcgagcgtggtgaggctggcggcaagggt gagggtggctctgcaggtcctcccggcccctatggccctgctggacccccgggccctgct ggtctggtcggtggaaagggagggcttggacccgccggcccagccggccccgttggattc cccggtgcttctggagcccctggtggatcaggacccgctggcctcaccggaccccccggc gggcctggcccagccggcaagtccggaccccgtggcccacgcggagacagcggccccacc ggacgtgacggctccaccggacccggcgggcccccgggcccaccgggcgagcgtggaccc gccggagcaaccggctccagcggccccgtcggcccccctggacccgccggattgtctggc ggtggcggaatgctgggagtgcccgggactcgcggagagaggggaggacctggaggacct ggcccatctggagccattggcagggatggtgctgctggccccgctggcgagaggggaccc gacgggccctcaggccccgctggtgcccccggacccgccggtgacgccggccgtgaaggc aacgccggttctgatggagccccaggccgtgatggatacgcaggggccaagggagagagc ggtgacgtcggccttgccggtgccgcaggagcgtcgggcctgatgggagcgccgggaccc agcggacccgctggcagcacgggcaaccgcggagaatccggtcccggaggaccaagtggc cccgctggccctgctgggccccgaggccccgcgggtccctctggcggcaagggaggcaag ggagaggctggtggcgctggagcgggcggagagaagggattccgtggagatcccggtccc caggggatgcccggcggaatgggtcgccctggagagaatggtggttctggagctgctgga ccaaccggtccaaggggcatcccgggttcccagggtcccgccggtcgtgacggacacgcc ggaaacgccggcaccgccggtggcaccggtccccgtggcccctctggaagcagcggccct gctgggcccgccggacccccaggcccacccggtccccccggcccctcgggaggcggcggc gggtacttctacgagtcggtgcaggccgaggtggagaaggggcccgacccgctgcgcttc taccgcggcgacgaggccgtgcaggagaaggccgtgcaagcacaggagatggaggcgtcg ctcaagacgatcagcggcaaggtggacctcctgcaggcgcccgacggcagccgggagagg cccgcgcgcacctgccgcgacctgcacctcacccaccccgacctcaagagcggcaactac tgggtggacccgaacaagggcagccccatcgacgccatggaggtgtggtgcaacatggag aggggccacacctgcgtggcggccaaccccaagtcggccgcccgcaagggctggcacagc gcccagggcaaggagcagaagcacatctggttcggggagaacgtccagggcggcttcaag ttcacctacggcgacgactccctcccagccaacacggcggccgtgcagatcaccttcctg cgcctgctgtcccgcgaggcgtcgcagaagctcacctaccactgccgcaacagcgtggcc gtgtccgacgagcggggcgacttcggcaaggccctgctgctgcagggctccagcgaggtg gagatccgtgcccaagggaactctcgcttcacctacagcgtcctgcaggacggctgcaag agccatacgggtcaatggggaaaagccgaaattgagtacaagtcacagaagacttctcgt ctgcccatactggatattgcgccaatggacattggagggcctgagcaggagtttggcatt gatattggccccgtctgcttcttctaa

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