Petromyzon marinus (sea lamprey): 116954756
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Entry
116954756 CDS
T09614
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116954756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116954756
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116954756
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116954756
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116954756
PBAF complex
116954756
GBAF(ncBAF) complex
116954756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
Ig_N_CWD1
Motif
Other DBs
NCBI-GeneID:
116954756
NCBI-ProteinID:
XP_032831420
UniProt:
A0AAJ7UA10
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All DBs
Position
56:9190089..9287394
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AA seq
950 aa
AA seq
DB search
MSARRRDAALPVSRSFELPATVVQLEPVRVWVLKAIRKHVQGEPPSSRALASLVGQLLTF
QEEVAGVPGGPLPTRIPMKCFLDFKPGGGLCHILSSVFKFKEEQSWRRFDFQSPSRVDSN
TELLVSVEKALLQNGLISRPIIFLQPDLDPKLTAKLKDIARKHQATTTEDKGFATHVVYP
APPAPPAEEDWVRPIQRKDKQVLLHWGYMADSSDSWLPASEAVLPVEEAPHPVTPWKVHA
RWLLDTALHHEWANEEDYEVDEGGRPQARRRRVPVRSLPLETAVVPDTEKKEKKEKGLSR
RRRHSPSPTEPRKKPNSKKRRHAMGEPLGKRHGRKDEEEEEEDLTKDMEEPLHVPNMTEV
QLPKNVYTKKDTEVAPIKGGVMTDLDEQEDENTDLGAKKDAAGKSLWSVSDAAQTITGSS
VLLPVSEDDELGPAMRLELGEDGAAEQQTHHIIIPSYTSWFEYNSIHAIERRALPEFFNS
KTKSKTAEIYLAYRNFMIDTYRLNPQEYLSGMVCRRSLAGDVCAIIRVHAFLEQWGLINY
QVDPDSKPSPTGPPPTAHFHVLADVPNGMAPMKPRGPQGPASQVMLTLVDRGRDKPAEVQ
SFGLRTDIYSKKNVSAKSKAAASASREWLDHETLLLLEALDLYTDDWNKVSEHVGSRTQD
ECILHFLRLPIEDPYLEESEASMGPLAYQPVPFSRSGNPVMSTVAFLASVVDPRVASAAA
KAALEEFSHRRVLLPPDLARVDDKKEEIILTQEQQQHKTSTEDSKLGIGNNEDEKSKEGV
ATEYGVVKVEAGNREETREEQGEEQENRSSRSKAETPAEALGMSSLPDASITATAAAAAL
IAAAAKAKQLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRERESLEYQRQQ
LLSDRSTFHLEQIKLAELRARQLQQQQLQQQQTCGPTGEHIGAVHTQDQP
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcggcgaagggacgcggcgctccccgtgtcgcgctccttcgagctcccggcc
accgtggtccagctggagcccgtgcgcgtttgggtgctcaaggcgatccgcaagcatgtg
cagggagagccaccctccagccgggccctggccagcctcgtgggacagctgctcaccttt
caagaggaggtggccggcgttccgggtggccccttgcccacgcgcattccgatgaaatgt
tttttggatttcaaacccggaggtgggctctgtcacattctctcttcagtgttcaagttt
aaggaggagcaaagctggcggcggtttgacttccagagcccgtcgcgagttgacagcaac
acggagctgttggtctcagtcgagaaggctctgctacagaatggactcatttccagacca
ataatatttctacagccagatcttgaccccaagctgactgccaagctgaaagacattgca
cgcaaacaccaggctacaaccacagaggataaaggcttcgcaactcacgttgtgtatcct
gcaccaccagctcctcctgcagaggaagattgggttcgtcccattcagaggaaggacaag
caagtgcttctacactggggctacatggctgacagctctgattcgtggctgcccgcgagc
gaagcagtgctaccagtggaagaggcacctcatcctgtcaccccctggaaggtgcacgcc
cgctggcttctggacaccgcgctgcatcacgagtgggcgaatgaggaggactacgaggtg
gacgagggtggacgaccgcaggcgaggcggcgccgtgtccctgtgcgttccctgcctctt
gagaccgcagttgttcccgacacagaaaagaaagagaagaaggaaaagggtttgtctcgg
aggcggaggcactccccctcgcccacagagcccagaaaaaagccaaattccaagaagagg
aggcatgcgatgggtgagccattaggaaagaggcatgggcgcaaggacgaggaggaagag
gaggaggaccttacgaaggacatggaggagcctctacacgtgcccaacatgaccgaggtt
cagctgcccaagaatgtttatacaaagaaagacacagaagtggctcctattaaaggcggt
gtcatgacagatttagatgaacaagaagatgaaaatactgatcttggagccaagaaggac
gctgctggaaaatccctgtggtctgtgagtgacgcagcccaaaccattacaggatcctct
gtactcttaccagtatcggaggatgatgaattgggcccagcaatgaggcttgagctgggt
gaagatggtgcagcggagcagcagacgcatcacatcatcattcccagctacacctcttgg
tttgaatacaacagcattcacgcaattgaaaggcgagcactaccggagtttttcaacagc
aagacaaaatcaaaaactgcagaaatctatctggcatacaggaacttcatgattgacacc
taccggctcaatccccaggaatatctcagtggaatggtgtgtcggcgaagcctggctgga
gacgtgtgtgctattatcagggtgcatgcgtttctggagcagtgggggctcataaactac
caagtggacccggacagcaagccctctcctacagggccacctcccaccgctcacttccac
gtgctggctgatgtacccaatggcatggcaccgatgaagccaagaggccctcagggccct
gcctcgcaggtcatgctgaccttggtggaccgtggacgggataagccggcagaagtgcag
agttttgggctgcgcacagacatatactccaagaagaacgtctctgcgaagagcaaagcc
gcagcaagtgcatcccgcgagtggctggaccatgagacattgcttttgctggaggcactg
gacctgtacacggatgactggaacaaggtgtcggagcacgtgggcagccgcactcaagat
gagtgcattcttcacttcctgcggctacccatcgaagacccctacctggaggagtccgaa
gcgtccatgggtccgctggcctatcagccggttccattcagccgctcagggaatcctgtc
atgagcacggtggcatttctggcttctgttgtggacccacgcgtggcctccgcagcggcc
aaggctgccctggaggagttctcgcacagaagagtcctgctacctcctgatcttgcaaga
gtggatgataagaaagaggagatcatactcacacaggagcagcagcagcacaaaaccagt
actgaagattccaagctcggaattggcaataatgaggatgaaaagagcaaggaaggagtg
gcgactgaatatggtgtggtcaaggtggaggctggcaacagggaggagacgagggaggag
caaggtgaggagcaagaaaataggtccagcagaagcaaagcggagactcctgcggaagcc
ctaggcatgtcgtccttgccagatgccagtatcactgcaactgctgctgctgctgctctc
attgcagctgctgccaaggccaagcaactggcagctgtggaggaacgcaagatcaagtca
ctggtggcgctgttggtggagacccaaatgaagaagctcgagatcaagctgagacatttc
gaggagctggagaccatcatggaccgtgagcgggagtcgctggagtatcaacggcaacag
cttctctccgatcgcagcacctttcacttggagcagataaagctggcagagctgcgtgca
aggcaactacaacagcagcaattgcagcagcagcagacttgtggaccgacaggagagcac
attggagcagtgcacactcaagatcaaccataa
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