Petromyzon marinus (sea lamprey): 116954778
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Entry
116954778 CDS
T09614
Name
(RefSeq) CLIP-associating protein 1-like isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116954778
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pmrn04812
]
116954778
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
116954778
Cytoskeleton proteins [BR:
pmrn04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
116954778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
CEP104-like_TOG
RTP1_C1
HEAT_2
TOR1L1_N
HEAT_DAAF5
HEAT_MROH2B_C
Cnd1
Motif
Other DBs
NCBI-GeneID:
116954778
NCBI-ProteinID:
XP_032831459
UniProt:
A0AAJ7U828
LinkDB
All DBs
Position
56:complement(4073691..4112769)
Genome browser
AA seq
1187 aa
AA seq
DB search
MPTLFNLVPNSAKVMATSGVAAIRLIIRHTHTARLIPLITSNCSSKSVAVRRRCFEFMDL
LLQVWQISSLERHVTVLSDTIKKGMHDADADARAEARKAYWGFRSHFPSESDALYAALEP
KYQKLLSGTQLHSSSNSHFDRSASSSQESLTRVVMPKRVPVRQADVSAPRAGASVARRRS
SAVAAAATPGSGLHRSRSDMDVNAATCASSRKTFAVPAPVSSATLGRVRSRPSTCGIMSS
PVTPTDARGRTRAKVSQSQPGSRCGSPGRVTGAARSVAGAVPGGVAQRVPVVPSPGVARK
QHRVPRSQGGSRDSSPSRSLRLSRGSRIPRPSMSQGCSRDNSRDASPVRGFSALVSQRHS
HSTSSLFPSDSLRKTVADRFGLDQAAYLPPSLHAMRVLNTSPEIEAAFADALLFRVSIRK
QRKPVRKRYDYGLGSDDDANSETSSMCSDRSYSSRGGGGGGGMGGVGGVGMVLGARPAED
VAEVLNHCASPNWAERKEGLMGLQNILKSQRPLSRVEMKRLCEIFSRMFSDPHSKRVFSL
FVETLVEFVAVHHNELHEWLSVLLTQLLKKTGADLLVSVHAKLQKALDTTRTLFPFDQQF
SILMRFIVDHAQTPSLKVKIAILKYIESLSRQMDPTDFVNSSEARLAMSRIITWTTEPKS
SDIRKAAQAVLISLFELNTAEFTMLLGALPKTFQAAATKLLNSHIRAAGMSPSQGWASGV
AHRPSSQSSTGRTRPLTSPGSASSQDSLSLGRPWGWGAANGLVKHAPTPGQTPSNPSPST
PSYSCGFRRNSTPSAPDYDTENMNSDDIYSSLRGVTEAIQNFRFRSQEDATEPIKRDGGG
TLSRDGRLSSSSSSAPAPAVCSSEPQRIPHHHHHHHNQLHHNHGPDGTDGGGRPALDNKT
SLLNTPSQHGLLTSSRNHVPGGSPATFNKSALREAIFDDDIEQFQDDIPLDHGDKVAELL
RELSECGECVEERQAALLELLKVTRENVMGLWDDHFKTVLLLLLEALVDSEPSIRALSLR
VLREILRTQPSRFKNYAELTIMKILDAHRDPQKEVLRAAEEAATALVCSISPEQSVKVLS
PVVQTADFPINLAAIKMLTRASERISRAALVQLLPDVIPGLLQGYDNAESSVRKASVFCL
VAVHAVVGDELKPYLGSLTGSKMKLLNLYIKRAAQNSSAECDNPMLS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgctcttcaacctggtgcccaacagcgccaaggtcatggcgacctcaggggtg
gctgccatccgcctcatcatacgccacacgcacacggcgcggctcatcccactcatcacc
agcaactgttcttccaagtctgtggccgttcgacggagatgttttgagttcatggacctg
ttgctacaagtctggcagatcagctcacttgagcggcacgtcacggtgctgtcggacacc
ataaagaagggcatgcacgacgcggatgctgatgccagggcggaggccaggaaggcgtac
tggggcttccggtcgcacttcccctccgagtccgacgccctctacgcggcgctggagccc
aagtaccagaagttgctgagcggcacgcagctgcacagctcctccaactctcacttcgac
cgctccgcgtcgagctcgcaggagagcctcacgagggtggtgatgcccaagcgcgtcccc
gttcgacaagccgacgtctcggcaccacgagccggagcgtctgtggcgaggcggcggtcg
tcagcggtggccgcggcggcgacgccggggtccggcctgcaccgctcgcgcagcgacatg
gacgtgaacgccgccacctgcgcctcgtcgcgcaagaccttcgcggtgccggcgcccgtc
tcctccgccacgctgggccgcgtgcggtcgcgaccttcgacctgcgggatcatgagcagc
ccggtgacccccacggacgcgcgggggcggacgcgcgccaaggtgtcccagtcacagccc
gggagccggtgcgggtcgccgggccgcgtcaccggcgccgctcggagcgtcgcgggcgcc
gtgccgggcggagtggcgcagcgcgtgcccgtggtgccgtcgccgggcgtggcgcgcaag
cagcaccgcgtgccgcgcagccagggcggcagtcgcgacagcagcccctctcgctccctg
cgcctgtcacgcgggagccgtatcccacgaccgagcatgagccagggctgcagtcgggac
aacagccgggacgccagccccgtgcggggattctctgcgcttgtgtctcaacggcactct
cactccaccagctccctcttcccctccgactcactgcgcaaaacagtggctgaccggttt
gggttggatcaggcagcctaccttccgccctccctgcacgccatgcgggtcctcaacacc
agccctgagatcgaagctgcctttgcggacgccctgctgttcagagtgtccatcagaaag
cagcggaagccggtgcggaagcgctacgactacggcctcggctcggacgacgacgccaac
agcgagacgtcgagcatgtgctcggatcgctcgtacagctcgcgcggcggcggcggcggc
ggcggcatgggcggcgtgggcggcgtgggcatggtgctgggtgcccgcccggcggaggac
gtggccgaggtgctgaaccactgcgctagccccaactgggcggagcgcaaggagggactc
atgggcctgcagaacatcctcaagagccagcggccactcagtcgagtcgagatgaagagg
ctttgcgaaatattctccaggatgttctcagatcctcacagcaagagagtgttcagcctg
tttgtggagaccctggtggagttcgtggcggtccaccacaacgagctgcacgagtggctc
tccgtgctgctcacccagctgctgaagaagacgggggccgacctgctcgtctccgtgcac
gccaagctgcagaaggccctcgacacgacgcggaccttgtttccttttgaccagcagttc
agcatcttgatgcggttcatcgtggatcacgcacagaccccgagcctcaaggtcaagatc
gccatcctgaagtacatcgagagcctgtcgcggcagatggaccccacggactttgtgaac
tcgagcgaggcgcggctcgccatgtctcgcatcatcacctggaccacggagcccaagagc
tccgacatcaggaaggcggcgcaggcggtgctcatctctctgtttgagctgaacacggcc
gagttcaccatgctgctcggcgcactccccaagaccttccaggccgccgccaccaagctg
ctgaactcgcacatccgtgccgccggcatgtccccttcgcaggggtgggcgagcggagtg
gcgcatcgcccctcgtcgcagtccagcacagggcggacgcggccgctgacgtctccaggg
agcgcgtcgtcccaggattcgttgtcccttggacgcccctggggttggggtgcggccaat
gggctggtaaagcatgcccccacccccggccaaacgccctccaacccttcccccagcacc
ccctcttacagctgtggctttcgacgaaattccacgcccagtgcacctgattacgacacg
gagaacatgaactccgacgacatctacagctcgctgcgcggtgtcacggaggccatccag
aattttcgcttccgcagccaggaggacgccactgaacccatcaaacgagacggtggcggc
actctctcccgcgacgggcgactgtcctcgtcgtcctcctccgcgccggcgccggccgtg
tgctcgagcgagccgcagcgcatcccccaccaccaccaccaccaccacaaccagctccac
cacaaccacggtccggacggcacggacggcggcggccgcccggcgctcgacaacaagacg
tcgctgctcaacaccccgtcgcagcacggcctgctgacgagctcccgcaaccacgtgcct
ggcggatcccccgccacgttcaacaaatccgccctgcgagaggccatcttcgacgacgac
atcgagcaatttcaggatgacatcccgctggaccacggggacaaggttgccgagcttctg
cgggagctgtcggagtgcggcgagtgcgtggaggagcgccaggcggccctgctcgagctg
ctcaaggtcacgcgcgaaaacgtcatggggctctgggacgaccacttcaagaccgtgctg
ctgctcctcctggaagctctcgtggacagcgagccgtccatccgcgcgctgtctctccga
gtgctgcgtgaaatcctgaggacgcagccatcgcgcttcaagaactacgccgagctcacc
atcatgaagatcctggacgctcaccgtgacccgcagaaggaggtgctgcgggcggcagag
gaggcggccacggcgctggtgtgctccatctcacccgagcagagcgtcaaggtgctgagc
cccgtggtccagacggccgacttcccgatcaacctggcggcgatcaagatgctcacgcgc
gcctccgagcgcatctcgcgcgccgccctcgtgcagctgctgcccgacgtcatccccggc
ctcctccagggctacgacaatgcggagagcagcgtgcgcaaggcgagtgtcttctgcctg
gtggcggtgcacgccgtcgtcggcgacgagctgaagccttacctgggctcgctcacgggg
agcaagatgaagctgctcaacctgtacatcaagcgagccgcgcagaacagcagtgccgag
tgcgacaacccgatgctcagctga
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