Petromyzon marinus (sea lamprey): 116954779
Help
Entry
116954779 CDS
T09614
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
Organism
pmrn
Petromyzon marinus (sea lamprey)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
BRCT
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-ANAPC11
zf-Nse
zf-RING_5
BRCT_2
zf-RING_6
zf-RING_4
zf-RING_10
U-box
PTCB-BRCT
Baculo_IE-1
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
116954779
NCBI-ProteinID:
XP_032831469
UniProt:
A0AAJ7XE78
LinkDB
All DBs
Position
56:complement(1407939..1437098)
Genome browser
AA seq
2102 aa
AA seq
DB search
MEARILRVRQVLTLMEQTLECPICLDIMKEPISTKCDHQFCRFCILELLEKSKGPALCPM
CKETVTRRSLRENPMFKQIVVGVQRTMQAFEEDTGLQFTAVPGPPEVSVWGSPQSEPNRR
ARGSRRPRTLGQSRAGATSLSETVSSRPKRQRARPNYVELGLDSLSDDGEPWISALAAED
GLKSSSFRRPRAERGGDTRSDGARQRGEAPSAPPPLAGEWSRDSTGVAGDTNPKMEPSPG
SAAPSGIAAAMVRKDDASSPAPATVSGEIAEEVKIAAPPAKKSKRVSIRKVKEWLQKMDV
AGEPKSASTDHVDGADKDDNEGGGGGDGDMADGGGDGAADSISGGSERTTLLEDRSMEVS
PVPVVVPLMELEKPLLTMNPGDRLFGKRYGRRHKLLPRARVQAAKRSRGALAPVCASTRV
AVDGAGGSGGVVRVVGTAGAPDDAITAEMGQVAASTRPPSTGKVVGKRRPRRSTEMSLED
FIRREPPSAVASTTGSVHAVREDGGMRVVKTRPKRRKLKNEASSHMKNEASPHQGNNGLP
QEQGENNGVPLQQRENGFALQPDTDASPKQGGENSPSLPQDINTSPLQQAVNETPLQPQQ
QPQLLRKSASAQKRSAAKVHRYHSVGDGSKSRRRLELQVGGPSHVSWVPASIECFSSSED
ALRNSPLQANKRRRSLGILGKDVRLADNDEGLARPRVTPPSAEVADDGAGGLHENRSVLP
GQKLARLCDHKCHGSPSVVPETPCSPASLLLVADGAAGGGVVTAPALARRCVVCLERMPP
GAVTAGSTVASPREAHRARHGTATTEPEHKLGSKDADCCGDEVSPIDTPDGLLVLLEEGA
EQDGRVSEGGREHGGDCTGVMAVTLTPAETLVERRGGPEEASGSGSNGSVVENSQSLLHP
QLERSGTEEGATGAGEALSLVDVSVASQMQQGLTRSVLNFQQEPTLNKSDSQLEPTEDKL
DPQEVRMQDKLDTHQEITPYKLYRQQERTQDELCPQGDLTQYKLNTHQELTPPDLSAQQA
SMPDSLPQHQEPIATTLIPQQESMGNDLDLQQLLNEAANFPREVKDVSKGVGSVEDGVVS
MEDSEVDTQVALLSFLPSKRRSFLLVSPGTSHQVGVHQSETHRTEEHQTSTHRGSGNQAE
TRGADEKQTISRHTGDNQTIIPPNGDNQTGDNQTIIPPNGDNQTGDNQTTIHQTGKHQII
SLQTADNQTITNPTGDNQTGDHQTICRQTGDHQTICRHTGDNQTINQQTDVNQTITHSAS
DNQTGDSQISTYQSGDNQTITRQIGDNPISTSQTSDKSSIHWTGHKQTNSHKPVDSQNNA
HLASLPLLSTNEVVLHRADAHRTVTDAMCARWAEPPRRGNRLTKRTHAGRCARGSGSSWR
SSSPSPGREATLRGGAGSGDESNDTLQLRHGTALPLPVPAGDAALSQSGTDGTPDIIMPT
QRNTTDSRPGSLAARSHTSATTSSQEDSSGRPSISTMADSQPEKVIGNSPLLTCCQSDMV
VGSGTGVRLGRRRSLIPCCEQPEVKVVDSSPSIAVDNSQSVAVISVSDLAVSAVSISPHV
ATARGRKQRRRRRIRVIVSSSSSDSDCEVELPSLGGMKVKWQQQGGMLGSPRDKGGPRTS
PPIGSTLPASSPPLSQCSTASMDLFASQSEGSVWGRHGPSSPGDRDGAEGRAEVAEATGL
TTSAGRRQPLNCDPESGGEGNSAAEPRSRRDGILENESESTVIWASQDVDSEMKQELMRN
LHEMGDEIAALEAALEDEDDCVPLPPSPPTPPSLCSRWKVGSRGQTAAQTTSHRDDGNGG
CELAGALSRRVPVGAVDRGSGGHGGRGAASPSWEAERSDTLSDARCYVDTAASHGGASVT
FSDVAHRAERLVDVGSTKESSGNPRRLCLVASGLSKRDALVVERFSHQAGGCFQSHFSPE
TTHVLMQTGGSLVCERTLKYFLGNAGHCWVLTFSWVEECLRQGCIVDEAPFEIQGDVVNG
PDHLGPRRSRLATLKLLREFEICCYGAFKEMTKAELECLVQMSGAVLVKEPSAFSFHPNF
VPLLVVQPDANPAGMDFTALHRLYSAQMVTREWVLDCIATHRVRRLNAYLLSPHTAPRQE
SP
NT seq
6309 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgcgcattctgcgtgtgcggcaggtgctaaccctgatggagcagacgctggag
tgccccatctgcctggacatcatgaaggagcccatctcaaccaagtgcgaccaccaattt
tgccgcttctgcattctggagctgctggaaaaaagcaaaggccctgcactgtgcccgatg
tgcaaggaaacagttacccggcggagcttgcgggagaaccccatgtttaagcagattgtg
gtcggggtgcagcgtacgatgcaggcgtttgaggaggacacaggcctccagttcactgca
gtgcctgggcccccggaggtttcggtgtgggggtccccgcagtcggagccaaacaggcgt
gcgcgcggctccagacgcccgcgtacgctgggtcagtctcgcgctggcgccaccagtctt
tcggagactgtctcctcccgcccgaagagacagagggctcggccgaactacgtagagtta
ggcctggactcattgtcggatgatggtgagccttggatcagtgcccttgctgcagaggat
gggttgaagagttcgtcgttccggcggcctcgagcggagcgtggtggggacacgaggagc
gacggcgcacggcagcggggtgaagcgccatcggcgccgcccccactcgctggcgagtgg
tcacgtgactcgacgggcgtcgctggcgacaccaatcccaagatggaaccctcgcccggt
tctgccgcaccatcggggatcgcggctgccatggttcgaaaagatgatgcaagctccccg
gcgccggcaactgtgagtggcgaaatcgccgaagaggtcaaaatcgcggcgccaccagct
aagaaatcgaagcgcgtaagcatccggaaggtgaaggagtggctgcagaagatggatgtt
gctggtgaacccaaatccgcgtccacagaccatgtggacggcgctgataaagacgacaat
gagggtggcggtggcggtgatggtgacatggctgatggtggcggtgatggcgctgcagac
agcatatctggaggctcagagcgcacgacactactggaggatcgttcaatggaggtgtcc
ccggtgccggtggtagtgccattgatggagctggagaagccactgctgactatgaacccc
ggggaccggcttttcggcaagcgctacggccgacggcacaagctgctaccgcgggcacgg
gtacaggcggcaaagcgcagtcgtggggctttggcgccagtctgtgcttctacaagggtc
gctgttgatggtgctggtggttctggtggcgttgttcgtgtggttggtactgctggcgcg
cctgacgatgccatcacggcggagatgggccaggttgcggcgagcacgcgccctccgagc
accggcaaggttgtggggaagcgccggcctcgccgatccacggagatgtctctggaggac
ttcatacggagggaacctccaagcgccgtagcgtcgaccaccggctccgtgcacgctgtc
cgtgaggatggcggcatgcgggtagtcaagacaagacccaaaaggcgaaaacttaaaaat
gaggcatcctctcacatgaagaatgaagcttccccgcaccaaggaaataatggtttgccc
caagaacaaggggagaacaatggggtacccctacagcaaagagagaatggttttgccctt
cagccagatacagatgcatctcctaagcagggaggagagaacagcccatccctaccacag
gatataaacacttctcccctgcagcaggcagtgaacgagacgccgctgcagccacagcag
cagccgcaactgctcagaaaaagcgcgtcggcacaaaagcgttcggccgctaaggttcac
cggtatcactcagtaggggacggcagcaagagccggcgccgtttggagctgcaggttggt
ggcccaagccatgtcagctgggtgccggcctccatcgagtgcttcagcagcagcgaggac
gccctgcgaaactctccgctgcaggccaacaagcgccgccgctcgctggggattctgggg
aaggatgtgcggctggcagacaacgacgagggccttgctcgcccgcgagtaactcctcca
tccgccgaggtcgccgatgacggtgcaggtggcctgcacgagaaccggagcgttttgccg
ggccagaaattggcgcggctgtgtgaccacaagtgccatggttccccgtcggtcgtgccg
gagacaccgtgctcgcccgcgtccctgctcctcgttgctgacggtgctgccggtggtggt
gtcgtcacggcaccggcgctggcgaggaggtgcgttgtctgcctagagaggatgcccccc
ggcgcggttaccgcggggtcgaccgtggcttccccgcgagaagctcaccgcgcccgccat
ggaaccgccaccaccgaaccagagcacaagctgggcagcaaggatgctgactgttgcggt
gacgaggtctcaccgatcgacacgccggatggcctgctggtgctgctggaggaaggtgcg
gagcaagatggcagggtctcggagggcggccgagaacatggcggcgattgcacgggggtg
atggcggtgacactgaccccggcggaaactcttgtggagcgaagaggtggcccggaagag
gcaagcggcagcggcagcaatggcagtgtggtcgagaatagccagtcactgctgcaccct
cagctcgagcgctcagggacagaggagggagcgacaggtgctggcgaggccttgtcgctg
gtggacgtttccgttgcatcgcagatgcagcaggggcttacgcgcagtgtgttaaatttt
cagcaggagccaactctaaataagtcagactcgcagctggaaccaacggaagataagtta
gacccacaggaggtacgaatgcaagataagttagacacgcaccaggaaataacgccgtac
aagttataccggcagcaggagcgaacgcaagatgagttatgcccacaaggggacctaacg
caatataaattaaacacgcatcaggaactaacaccacctgatttaagcgcacaacaggca
tcaatgcctgattcattgcctcagcaccaggagccaattgcgactacattgatccctcag
caagaatcaatgggcaatgacctggacttgcagcagctgctaaacgaagctgcaaatttt
ccacgtgaggtgaaagatgtaagtaagggcgtggggagcgtggaggatggcgtggtgagc
atggaggatagcgaggtggacacacaggtggcactcctctctttcctgccctccaagaga
cgctcgttcctcttggtgagtcctggcacctctcaccaggtgggtgttcaccaatccgag
acccaccggacggaagagcaccagaccagcacccaccggggcagtggtaaccaagccgag
actcgcggagccgatgaaaaacaaaccatctctcgccacactggtgataaccaaactatt
attcccccaaacggtgataatcaaactggtgataaccaaactattattcccccaaacggt
gataatcaaactggtgataaccaaactaccattcaccagactggcaagcaccaaatcatc
tctctccaaactgctgataaccaaaccatcactaacccaaccggtgataatcaaactgga
gatcaccaaacgatctgtcgccagactggtgatcaccaaaccatttgtcgccacactggt
gataaccaaactattaatcagcagactgatgttaaccaaaccatcactcactcggccagt
gataatcaaactggtgatagccaaatcagcacttaccagagcggtgataaccaaaccatc
actcgccaaattggtgacaacccaatcagcacttctcagaccagtgacaaaagcagcatt
cactggaccggtcataaacaaaccaacagtcacaaacctgttgatagccagaacaacgct
cacctggcaagcttgccactacttagcactaatgaagtcgtcctccaccgagccgacgct
caccgcaccgtcacagacgcgatgtgcgcccgctgggctgaacctccacgtcgcggtaac
cggctgacgaagagaacccatgccggcagatgcgcgcgaggctccggctcctcctggcgc
tcatcctcaccgtcgcccggccgagaggccacgcttcgggggggcgccggcagtggcgac
gagtcaaacgacacgctccaacttcggcacggaacggcgctgcccctcccggttccggcc
ggtgatgcggcgcttagtcagagtggcacagacggcactcctgacatcatcatgcccacc
cagcgaaatacaaccgacagtcggcccggttcgttggctgcacgtagccataccagcgca
accactagcagccaggaagattccagtggtcgaccgtccatctcgacaatggccgacagc
cagccggagaaagtaatcggcaactcgccgctgctaacctgctgtcagtccgatatggtc
gttggcagcggcacgggtgtgcgtcttgggcggcggcggtcgctcattccatgttgtgaa
cagccggaggtgaaagtggtcgacagctcgccgtccatagctgttgacaacagccagtcg
gtcgccgttatcagtgtcagtgacttggcggtctcggccgtgagcatctcgccgcacgta
gctactgcgcgaggccggaagcagcggcggcggcggcggattagagtcattgtatcatcg
tcatcgtcggacagcgactgcgaggtggagctgcccagccttggcggtatgaaggtgaag
tggcagcagcaggggggcatgttggggagcccacgtgacaaaggaggaccccgcacgtcc
ccccccatcggcagcaccctccccgcgtcgtcccctccgctcagtcaatgctcgactgcg
tccatggatctgtttgcgtcgcagtcggagggctccgtgtggggccggcatgggccaagc
agccctggcgatcgagacggcgccgaggggcgcgcggaggtcgcagaggccacggggttg
acgacctctgccggtcgtcggcaacctttgaactgtgaccctgagtcaggtggggagggc
aacagcgcagcagagccaaggtcaaggagagacggcattttggagaacgagagcgagtcg
accgtcatctgggcgtctcaggacgtcgactctgagatgaagcaggagctgatgcggaac
ctgcacgagatgggggatgagatcgccgctttggaggccgccctggaggacgaagacgac
tgcgtccccttgcctccctctcctcccacacctccctcgctttgctctcgttggaaagtc
ggctcgcgcggacagacggccgcccagacgacctcgcaccgggatgacggaaacggtggc
tgcgaattggccggcgctttgtcgcgtcgcgtgccggtcggcgccgtcgaccgtggatct
ggaggacatggcggtcggggagccgcctcgccatcgtgggaggccgagcgctccgacacg
ctctcggacgcccggtgctacgtagacactgctgcctcgcacggcggcgctagcgttact
ttttccgatgtcgctcaccgtgcggagaggctcgttgacgtcggcagcacgaaagaatcc
agcgggaatcctcggcgcttgtgcctcgtcgcgtccgggctgagcaagcgggatgcgctg
gtggtcgagcggttttcacatcaggccggcggttgcttccagtcgcacttctctcctgaa
acgactcacgtgctcatgcagacaggtggcagcctggtttgtgagcgcacgttgaagtat
ttcctgggcaacgcaggacattgctgggtcctcaccttctcttgggtggaagaatgtctg
cgtcaaggctgcatcgtggatgaggccccgtttgagattcagggcgacgtagtgaatggt
cccgaccacttggggccccgtcggtcacggcttgcaactctgaagctgctgcgggagttt
gagatctgctgctacggtgccttcaaggagatgaccaaagcggaacttgagtgtctggtt
cagatgagcggagccgtgcttgtgaaggaaccgagtgctttctccttccatccgaacttt
gtgccgctgctggtcgtgcagcccgacgccaacccggccggcatggacttcacagccctg
caccgcctctacagcgcccagatggtgacgcgcgagtgggttctggactgcatcgccacg
caccgtgtgcgtcgtctcaacgcatacctcctgtccccccacaccgcgcctcgccaggag
tccccatag
DBGET
integrated database retrieval system
