Petromyzon marinus (sea lamprey): 116955176
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Entry
116955176 CDS
T09614
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04854
voltage-dependent calcium channel T type alpha-1G
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04010
MAPK signaling pathway
pmrn04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116955176
04020 Calcium signaling pathway
116955176
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmrn04040
]
116955176
Ion channels [BR:
pmrn04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
116955176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
SGT1
DUF4834
Motif
Other DBs
NCBI-GeneID:
116955176
NCBI-ProteinID:
XP_032832080
UniProt:
A0AAJ7UBA6
LinkDB
All DBs
Position
58:complement(1947758..2203268)
Genome browser
AA seq
3032 aa
AA seq
DB search
MDDGARPTTAAAAAAARPSFGRAAAYSTQQPPQQQLQRESTATPAATHPPAASTAGGPLL
PPPPPPPLPPSSSSSSTAFVHLYDAGASGRDPAGRAAPNRATSTATLGGGAAGGGDGGDG
DGLEAGKSSATEGLPYPLLAPIAFYVLRQSTRPRCWCLKVVCNPWFERLSMLIILLNCVT
LGMFQPCEDIDCSSDRCKILKRFDDFIFAFFAVEMVIKMLALGVFGKQCYLGDTWNRLDL
FIVVAGMLEYSLDMQNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLL
CFFVFFIFGIIGVQLWAGLLRNRCFLANNFTEMFNMTYDPYFIPDDGDESPFLCSLNSDN
GMQRCADIEPSLSPDGAVCSLPALLFLQQQQQQRRQRDGEAAGAAAAMEQGGQRHRNNNH
HHHPSHHGHFHNYDGGGADGMQEAFRDLPRTNTCVNWNQFYSRCGPAQRNPFRGAINFDN
IGYAWIAIFQVITLEGWVDIMYYVMDVHSFYNFIYFILLIIVGSFFMINLCLVVIATQFS
ETKQRECQLMREQRARFLSNDSTLASFSEPGSCYEELLKYVGHVYRKAARQARRAYREWR
RRRRRRRSFGGGGVASAGSVCAGGEYGVGAEYAGGFCSAAWDRRRGRADGGGAAGAAAVA
FGRRRQRPAKESAERKRRRRRKRMRSIHHLIHHHHHHHHHHYHLGSEQQQKTDKLVAFGS
GVGGGGNANGSSRLLGSELGNLRQACGECGGSNSGSSGGGSGGSSGGGSNNGGGSGGGGG
GGGGSSSGSARPSNSLVVPVGPSLQQASSSESVHSVYHADCHLDALPLRHSPAAASPRTE
SLRSVARMSAAAAAAAAAAVAQAQGGGLPGGEAPAAGGAGAGACRAVVAAAVSDGGKEKR
VQLAPPPMDPYTKLQHFVGARSSCCGGGAPPLSVSFSAGAARGDVLPCKLEKCSLCAEAV
SAMRRHAQRDDDDDDDDDDDDDDDDDDDDDDDLCSDSENDENENFEGYNSDVDRDRREEE
EEGEEEDEAHVAARGGAGAGAGECVYEFTRDVVHSRPHHAGWSLGHCGDRSAWDAAAAAA
ASAAASAAARRQRAQLTQQQRRKRRRKRRRRGRGEEDEEGDGGGGACRRCLRALAHCLRK
IVDSKYFNRGIMVAILINTLSMGIEYHEQPDELTSALEISNIVFTSLFALEMVLKLLAFG
PLGYIKNPYNIFDGVIVIISVWEIVGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVL
IKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSRHLDNGDTVPDRKNFDSLLWAIVTVF
QILTQEDWNVVLYNGMASTSPWAALYFIALMTFGNYVLFNLLVAILVEGFQAEKHKSRTC
VEGDTNRSESSFGKGSVSFDDDLGKKSEFPMMTIVTPNGHVDSKCSLGPPIITHTAATPM
PTPKGSPHADGPVSRHGSAASIGPPVHSANPDQKSLVGSFSAGSWSSRRSSWNSLGRASS
LIRRGGDDANGGERESLLSSSRCGAGGGGGGGAAAAAVTGHNSAAGSGWGSGSDEDDAGG
EERGGGGGSTAMMMGDAEKLQNHHRHHHHHGHQRHQQQQQRHHHQQQQQQQQLHHHQRSA
SVCKEAPRSRRSASLCTSPDAPFDPEPMVLVVPSLSLPAGDGPAGAAVGRRARRDSACNG
RTARDVDGKRAEEEEEEDEEYSDESCLSRMRKRLQPLKPRFCAEREDWSLYLFAPRNRFR
MLCQKIISHKLFDHSILAIIFLNCITIALERPDIQDRSMERLLLSIANNVFTVIFTLEMT
VKVVALGLFQGERAYLQTSWNILDGVLVLVSIVDLLVAHVGGPKILGILRVLRLLRTLRP
LRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEAPEALR
VANRSDCEAHQLKWMRYKYNFDNLGQALMSLFVMASRDGWVDIMYNGLDSVGVNQQPRQN
HNPWMLLYFISFLLIVGFFVLNMFVGVVVENFHKCRQQQEEEETKRREDRRQQRLEKKRR
KAQRQPYWASYSRPRLLIHKMCTAHYLDLFISIIIGLNVVTMSIEHYAQPKALDRALKYC
NYVFTVVFVLEAVLKLIALGFRRFFKERWNQLDVAIVLLSIMGITLEEIEINASLPINPT
IIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFG
NLECIKQACEGLGRHATFKNFGMAFLTLFRVSTGDNWNGIMKDTLRECAPEEEGGGGQEG
GGGGESCCCHNTLVSPLYFVTFVLAAQFVLVNVVVAVLMKHLEESNKEAREDAELDAQVE
MEMEWARYGGDGAESGGIGRDSESGRSFERCSLRQDSPLQRHHTLEKMGFDNVSLIVQDS
MEAELLMMDNISGSVFHHYATPVPEKRANHKHEIPFAEMEAMSVTSDKLSEKSWSLPLTD
DSYPDVGGTRTPQPEGRCTEDASSPCPEAGDADSGGHLLSVRKVSIGRTHSLPNDSYMFR
PVDSVAGPPLPPDAGGAAVFEPTTPAASAGPRLPTQRSQAEAACAFLQLPPPPPFAAFPV
PAHAQATAGVPRLPPPAPPRSPGSQRLLRRQAAVRMDSIDAPTLGSKDSLLSATQDSPVH
HIPHHHHQQPPQLPLAPPPPPLPSLRPPPTVPRPLPRRVGSGVGGGGGGGGAAANGAGGR
LSREGSDPNDEEVRRITRGSAVAAASGREVKKCHSVDDRGLLSVAAAAAAAAAAGSSAGA
AGCWWTDDARRHSIEICPEMQTRADRRGSLAPLEGRRSPRPPPRKEKLSPPCISVEPPPS
ETCGGGTSQGGGGGGGGPPATVPGCATTPRLRRRTPCSAESSQDGGGASEESCRPPLPSC
ALLLPPVTPPPPPSSSSSFGSNSSPSSSSSSSPSPFFLAVPWSESSPRPPVQALAQATPR
PPLPPLPAPPLLPPPHKRQKQGGAERRPDGASHDDAAPKDAPPAAAAVAKHGNVAQQRPP
PPLSPAAAAACPHGRMRSPLMKQRTLGKQDEE
NT seq
9099 nt
NT seq
+upstream
nt +downstream
nt
atggacgatggcgctcgtcccaccaccgccgccgccgccgccgctgctcgcccgtccttc
ggcagagccgccgcatactccacgcagcagccaccacagcagcagctacagcgggagtcc
accgctacccccgcagccacccacccccccgcggcctccaccgctggcggtccgctgctt
ccaccaccaccgccaccaccactacccccctcctcctcctcctcctccaccgcgttcgtc
cacctctacgacgcgggagcgagcggcagggacccggcggggagggccgcgccgaaccgc
gccacctccacggccaccctcggtggcggagctgccggtggcggcgacggaggcgacggc
gatggtttggaggccgggaaaagctcggccacggagggcctcccctacccgttgctcgct
cccatcgccttctacgtcctgcggcagagcacacggcctcgctgctggtgcctcaaggta
gtgtgcaacccgtggtttgagcgactcagcatgctcattatcctgctcaactgcgtcacc
ctcggcatgttccagccctgcgaggacatcgactgctccagcgaccgctgcaagatcctc
aagaggttcgatgacttcatcttcgccttcttcgcggtggagatggtcatcaagatgctg
gcgctcggcgtgttcgggaagcagtgctacctgggtgatacgtggaaccgcctagacctc
ttcatcgtcgtggccgggatgttggagtactccctggacatgcagaacgtgagcctgtcc
gcgatccggacggtgcgtgtgcttaggccgctacgcgccatcaaccgcgtccccagcatg
cgcatcctggtgacgctgctgctcgacacactgcccatgctgggcaacgtgctgctcctc
tgcttcttcgtcttcttcatcttcggcatcatcggcgtgcagctgtgggccggcctgcta
cgcaaccgctgcttcctggccaacaacttcaccgagatgttcaacatgacctacgacccg
tacttcatcccggacgacggggacgagtcgcccttcctctgctccctcaactccgacaac
ggcatgcagcgctgcgccgacatcgagccgagcctctccccggacggcgccgtctgctcg
ctgccggcgctcctcttcctgcagcagcagcagcagcagcggcggcagcgcgacggggaa
gcggccggggcagcggccgcgatggagcaaggcggacagcggcatcgcaacaacaaccac
caccaccacccgtcgcaccacggccacttccacaactacgacggcggaggggcggacggg
atgcaggaggcgttccgggacctgccgcgcaccaacacctgcgtcaactggaaccagttc
tattcacggtgcggccccgcgcagcgaaaccctttccgcggcgccatcaacttcgacaac
atcggatacgcctggatcgccatcttccaggtgatcacgctggaaggctgggtggacatc
atgtactacgtcatggacgttcactccttctacaacttcatttacttcattctgctcatc
atcgtcggctccttcttcatgatcaacctgtgcctggtggtgattgccacgcagttctcc
gagaccaagcaacgtgagtgccagctgatgcgggagcagcgcgcccgcttcctttccaac
gacagcaccctcgctagcttctcggagccgggcagctgctacgaggagctgctcaagtac
gtgggccacgtgtaccgcaaggcggctcgccaggcccgccgcgcctaccgcgagtggcgc
cgccgacggagacgcaggaggagtttcggcggcggcggcgtcgcgagcgccgggagcgtc
tgcgccggaggggagtacggcgtcggcgcggagtacgccggagggttttgctcggcggcg
tgggaccggcggcgagggagggccgacggcggcggcgcggccggggccgccgccgtggcg
tttggccggaggcggcagaggccggcgaaggagtcggcggagaggaagaggaggcggcgg
aggaagaggatgcgctcgatccaccacctgatccatcaccaccaccaccatcaccaccac
cactaccacctcggctccgagcagcagcagaagacggataagctcgtcgcgtttggcagc
ggcgttggcggcggcggaaacgccaacgggagttcccggctactcgggagcgagctggga
aatttgcgccaagcgtgcggcgaatgcggcggttccaacagcggcagcagcggcggcggc
agcggcggcagcagcggcggcggcagcaacaacggcggtggtagcggtggtggcggtggc
ggcggcggcggtagcagcagcggttcggcgcgtccctccaacagcctcgtggtgccagta
ggcccgagcctgcagcaggcctcgagttcggagtcggtgcacagcgtctaccacgcggac
tgccacctcgacgcgctgcctctccgccactcgccggcggcggcctccccacgcaccgag
tcgctccgctcggtggcgcggatgagcgccgcggccgctgccgccgccgccgcggctgtg
gctcaggcccagggaggaggcctccccggcggagaggcgccggcggcggggggtgccggc
gccggcgcctgtcgcgcggtggtggcggcggcggtgtctgacggagggaaggagaagagg
gttcagttggcgccgccgccgatggatccgtacacgaagctccagcactttgtgggagct
cgcagctcgtgctgcggagggggggcgccccccctctcggtgtcgttttccgcaggggcg
gcgcgtggcgacgtgttgccctgcaagctggagaagtgctcgctgtgcgcggaggccgtg
tcggccatgcggcggcacgcccagcgggacgatgacgacgacgacgatgacgacgacgac
gacgatgacgacgacgacgacgacgacgatgacgacttgtgttcggattcggaaaacgac
gagaacgagaatttcgaaggatacaattcggatgtggatcgagaccggcgagaagaggag
gaggagggggaggaagaggacgaggcccacgtcgccgcacgtggcggtgccggcgctggc
gccggcgagtgcgtgtacgagttcacgcgcgacgtcgtgcactcgcgcccgcaccacgcc
ggctggagcttggggcactgcggcgatcgctcggcgtgggacgcggcggcggccgcggcc
gcgtcggcggcggcgtcggccgcggcgagacggcagcgggcgcagctgacgcagcagcag
aggaggaagcggaggaggaagaggaggaggcgagggagaggcgaggaggatgaggagggc
gacggtggcggcggtgcttgccggcgttgcctgcgcgccctcgcgcactgcctccgcaag
atcgtcgacagcaagtacttcaaccggggcatcatggtggccatcctcatcaacacgctc
agcatgggcatcgagtaccacgagcagccagacgagctgacgagcgcactggagatcagc
aacatcgtcttcacgagcctcttcgcactggagatggtcctcaagctcctggcgttcggt
cccttggggtacatcaagaacccctacaacatattcgacggcgtcattgtcatcatcagc
gtgtgggagatcgtgggccagtcagacggggggctgtcggtgctgcgcaccttccgcctg
ctgcgggtgctcaagctggtgcgtttcatgcccgcgctccggcgccagctcgtggtgctc
atcaagacgatggacaacgtcgccaccttctgcatgctgctcatgctgttcatcttcatc
ttcagcatcctgggaatgcacctgtttgggtgtaagttcagccgtcacctcgacaacgga
gacaccgtcccagaccgcaagaactttgactccctcctgtgggccatcgtcaccgtcttc
cagatcctgacgcaggaggactggaacgtggtgctctacaacggcatggcctccacgtcg
ccctgggccgcgctctacttcatcgccctcatgaccttcgggaactacgtcctcttcaac
ctccttgtcgccatcctcgtggagggcttccaggccgagaaacacaaatcacggacctgt
gtggagggcgacacaaaccgctccgagtcaagcttcgggaagggctccgtgagcttcgac
gacgacctggggaagaagtcggagttccccatgatgacgatcgtgacgcccaatggccac
gtggattccaagtgcagcctgggcccgccgataatcacccacacggccgccaccccgatg
ccgacgcccaagggctcgccgcacgccgacggcccggtgtcgcggcacggcagcgcggcc
tccatcgggccgcccgtccacagcgccaaccccgaccagaagtctctggtcggcagcttt
agcgccggcagctggagcagtcgccgctcgagctggaacagcctgggccgcgcatcgagc
ctcatccggcgcggcggcgacgacgccaacggcggcgagcgcgagtctctgctctcctcg
tcgcgctgtggagcggggggaggtggcggggggggggcagcggcggccgccgtcaccgga
cacaactcggccgccggtagcggttggggttcgggctccgacgaggatgacgccggcggg
gaagagagggggggtggtggcggctcgacggcgatgatgatgggggacgccgagaagctg
cagaatcatcatcgccaccaccaccaccacggtcatcagcgccaccagcagcagcagcaa
cgtcatcaccaccagcaacagcagcagcagcagcagcttcaccaccaccagcggagcgcg
agcgtctgcaaggaggcgccgcgcagccgtcgaagcgcgtcgctctgcacgtcgcccgac
gcgccctttgaccccgagcccatggtgctggtggtgccctcgcttagcctgccggcgggg
gatggaccggcgggggcagcggtggggcgccgcgctcgcagggacagcgcgtgcaacggg
aggacggcgagggacgtggacgggaaaagggccgaagaggaggaggaggaggacgaggag
tactcggatgaaagctgtctgagtcggatgaggaaacgcctgcagcctctgaagccgagg
ttctgtgcggagcgcgaggactggtcgctctacctgttcgctccacgcaacaggttccga
atgctctgccagaagatcatctcccacaagctgttcgaccacagcatcctcgccatcatc
ttcctcaactgcatcaccatcgcgctggagaggccagacatccaggatcgtagcatggag
aggctactgctctccatcgctaacaacgtcttcaccgtcatcttcacgctggagatgacc
gtcaaggtggtggccctgggcctgttccagggcgagagagcctacctgcagaccagctgg
aacatcctggacggcgtgctggtcctagtctccatcgtggacctcctggtggcccacgtg
ggaggccccaagatcttgggcatcctccgggttctgcgcctcctccggacgctccgcccg
ctcagggtaatcagccgagccccgggtctcaagctcgtcgtggagacgctcatctcctcg
ctcaagcccatcggcaacatcgtcctcatctgctgcgccttcttcatcatcttcggcatc
ctcggcgtccagctcttcaaggggaagttctactactgcgaggcgcccgaggccctgcgc
gtggcaaaccgctccgactgcgaggcgcaccagctcaagtggatgcgatacaaatacaac
ttcgacaacctgggccaggcgctcatgtcgctgttcgtgatggcctcgcgcgacggctgg
gtggacatcatgtacaacggcctcgactccgtgggggtcaaccagcagccgaggcagaac
cacaacccctggatgctcctctacttcatctcgttcctgctcatcgtcggcttcttcgtg
ctcaacatgttcgtcggcgtggtggtggagaacttccacaagtgccggcagcagcaggag
gaagaggagaccaagcgcagggaggacaggcggcagcagcggctcgagaagaaaaggcgc
aaggcccagcgccagccgtactgggccagttactcacgcccgcgcctgctcatccacaag
atgtgcaccgcccactacctggacctcttcatctccatcatcatcggcctcaacgtcgtc
accatgtccatcgagcactacgcacagcccaaggctctggaccgggccctcaagtactgc
aactacgtcttcaccgttgtcttcgtgctcgaggccgtgctcaagctcatcgccctcggc
tttcggcggtttttcaaggagaggtggaaccagctggacgtggccatcgtccttctgtcc
atcatgggcatcacgctggaggagattgagatcaacgcctcgctgcccatcaacccgacc
atcatccgcatcatgagggtgctgcgcatcgcccgggtgctcaagctgctgaagatggcg
acggggatgcgagcgctactcgacaccgtcatgcaagccctgccgcaggtggggaacctg
ggcctgctcttcatgctgctcttcttcatctacgcggcgctgggagtggaactcttcggg
aacctggagtgcatcaagcaggcatgcgagggcctagggagacacgcgaccttcaagaac
ttcggcatggccttcctgacgctcttccgcgtctccacgggcgacaactggaacgggatc
atgaaggacacgctgcgcgagtgcgcgccggaggaggagggcggcggtggtcaggagggc
ggcggcggcggcgagagctgctgctgccacaacacgctcgtgtcgccgctctacttcgtc
acgttcgtgctcgccgcccagttcgtgctcgtcaatgtcgtcgtggccgtcctcatgaag
cacctggaggagagcaacaaggaggcacgcgaggacgcggagctcgacgcgcaggtggag
atggagatggaatgggcacgctacggcggagacggagccgagtcgggcggcatcggtcgc
gattccgagagcgggcgctcgttcgagaggtgcagcctgcggcaggactccccgctgcag
cgccatcacacgctggagaaaatgggcttcgacaatgtctcgctcatcgtccaggactcg
atggaggcggagctgctgatgatggacaacatctcgggctccgtgttccaccactacgcg
actccggtgcccgagaagcgcgccaaccacaagcacgagatcccctttgcggagatggag
gccatgtctgtgacgtcggacaaactctccgagaagtcctggtcgctgccgctcactgac
gactcctacccagacgtggggggcacacgcacaccccagccagagggccgctgcacggag
gacgcctcctccccctgcccggaagcgggcgacgccgacagcggcggccacctgctctct
gtgcggaaagtgagcatcgggcgtacccactcgctccccaacgacagctacatgttcaga
cccgtcgactccgtcgccggcccgccactgccgcccgacgcggggggcgcggcggtcttt
gagccgacgacgccagcagcatcagcgggcccgaggctgccgacccagcggtcgcaggcg
gaggcggcctgcgccttcctgcagctgccccctcctccgcccttcgccgcctttcccgtg
ccggctcacgcgcaggcgacggcgggcgtgccccggctgcccccgccggcgccccctcgc
tcccccggctcccagaggctcctgcgaagacaggccgcagtccgaatggactccatagac
gccccgaccctgggctccaaagacagcctcctctccgccactcaagacagccccgtacac
cacatccctcatcatcaccatcagcagccgcctcaactgccgctagcgccgccgccgccg
ccgctcccatctctgcggccgccccccaccgtgccgaggcctctcccccgacgggtaggg
agcggcgtcggcggcggcggcggcggcggcggcgctgcggcgaacggggcgggggggcgg
ctgagccgggagggctcggaccccaacgacgaggaggtgaggaggatcacgaggggctcg
gcggtggcggcggcgtcgggccgcgaggtgaagaagtgccacagcgtggacgaccgaggg
ctgctctccgtggccgcggcggccgcggcggccgcggccgccgggtcgagtgccggggcg
gcgggctgctggtggacggacgacgccaggagacactccatcgagatctgccccgagatg
caaacgcgagccgaccgtcggggttccctggccccccttgagggcagacgctccccgcgc
ccccccccacgcaaagaaaagctcagccccccctgcatctccgtcgagcctccgccgtcg
gaaacctgcggcggcggtaccagccagggcggcggcggcggcggcggcggccctccggcc
accgtccccggctgcgccaccacccctcgcctccgccgacgcaccccgtgcagcgccgag
tcgtcgcaagacggcggtggagcctccgaggagtcctgtaggccgccgctgccctcctgc
gcgctgctcctgccgccggtgacgccgccaccgccgccgtcgtcatcgtcgtcgttcggt
tccaattcttcgccgtcgtcgtcgtcttcgtcatcgccgtcgccgtttttcttggccgtg
ccgtggtccgagagttccccgcggcctccggtacaggctctggcccaggccacgccgagg
ccgcccttgcctcctctcccggcgccgccgctactgccgccgccccacaagaggcagaag
cagggcggggcggagcggcggcccgacggcgcgtctcacgacgacgcggcaccgaaggac
gcgccgcccgccgccgccgccgtcgccaagcacggcaacgtcgcgcagcagcggccgccg
ccgccgctgtctccggcggcggcggcggcttgcccgcacgggcgaatgcggtcgccgttg
atgaagcagaggacgttggggaaacaggacgaggagtag
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integrated database retrieval system
