Petromyzon marinus (sea lamprey): 116955704
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Entry
116955704 CDS
T09614
Symbol
ATRX
Name
(RefSeq) transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
116955704 (ATRX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmrn03000
]
116955704 (ATRX)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116955704 (ATRX)
Transcription factors [BR:
pmrn03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
116955704 (ATRX)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116955704 (ATRX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
ATRX_C
Motif
Other DBs
NCBI-GeneID:
116955704
NCBI-ProteinID:
XP_032832853
LinkDB
All DBs
Position
61:complement(2663653..2814475)
Genome browser
AA seq
2981 aa
AA seq
DB search
MSTKRKSKKLDSLVQKLQDFMTQSVGEEEAEAEIMGSDGNEEEANADAKTSSLADKMRRD
KDTSSPSPQAGPSRSRRKPAHVVKVIASDDDNDDLAEEEDARNKEQGNNNNNDDNDDLED
GQEVDDDGGGGGGGGDDDDGSGGGGGSKGRVGMVRGGGGGRRRDKERQATQEQEAEDSAD
AAMDVSELPEGTVVVEPEPVQDEKRDAFRGPEFRGGSEGGGGGGGGGGRGGGGGSEGRSG
KSRRLVHGAEGTLQSIVSCTACGSQVNHFIKDSLFRHPVLKTLICKSCYKYYTSDDINQD
EEGMDEQCRWCAEGGNLLCCDFCHNAFCKSCVLRNLGRRALRDVVASGDAKWACFVCDPA
PLIDVVAACDAVFESLDLRGKRWHHQNRQQQQHRRQQQEQQQQQQQQVRHRRNRHEKPGK
RGERGERGGGGGGDVTVRCAETGAAITVPRPPIGGGQDVRRQLMIPKEVFRKSQKLIEAT
VNLSLKYIKFLGSASRSGDDDDAGDAGDAGHRGSSPERLAVRLRKARAFRSVLSELRKAH
VALHRSMEEEVATQAASIRELEAKGGRAKAAAEVKAAAEAKEEVDEEEEVKEGGRGGKGA
KEGNRGGRKAQAESRPSKDKVKGRHRAEREGEKVNEEVDDEVEDEEEDAGRLPKGAPAER
PGGKEEPARGPASEPRRAAPGGPSPAPRHHRRKSLRTARSQEEPGGDAAAAAAAAAAAAA
SSSEEGGGGGGGSGDEEGDGGGHGGDRAVRIGAVKKPKPSAEEPAPSGVDAASKAEAGDE
PIAAFTADFDFDMAEHAVADDSWLLAELSDISSCVQPAADGDAGKAADGKAAADAGGAAK
AGGDDRQSDAARREEEEVVEEEEEEDVEGDDVEEEEEEDEDGGTKSKERATTKKRKKKAN
GKNRPLSASRKAKDGDAKSHGKEEEEEEEEEEEGEADEEEADEEEAVTPAKERAASKPSA
LSEPSVKTGPVVRLRPIKALPEQPLGPTATEGGARSPATDDGGADDDCENGEKEEEDEEE
EEEGRHTRATTERRKKERGGDDDDGRGRGKKTRRSKKTLEKKHKYEEEEEEEKEKKKQKQ
KKGEKMSEGEEEEKEKQKQKKGEKMKEKKKQKQKKGEKMSEGEEEEEEEKEKKKQKQKKG
EKMSEEEEEEAGAGEASADKVESDRHRLQRPHGQRENGEQGEVELGKEEEEGDEGKEEDE
GKEEDEGKEEEDEEDEESRMRCGDEDARPKSKRRKSPRRPGGDDKADAADSKRSPRQKTT
PLRRPSAGVAKRLLGAAEEEGAWRRPGSSSNNNSSDDDAAEGEGGGEDAAGKAEAASPRR
PTKGGRAKRGSKLAARDDGDDGGDDGGDDDGGDDSDEPPGTATKAEDEADEASDSDEVPL
ILRMSARDAGAAGRASSDDDDDEGEEDDEKDGSGGDDGDKRGVAKKGKRAALASKRKAGG
GKAAASNDEAEGDEGDEGDEAEGEKTTSRLGKKRGKAAAAAASASPSRATTRSASAKRRR
RRSDSSNYDPELEREIGRLGKLRPAKRARTAKGDDGGGDDDDDDDDDEVAAAAAARKKRQ
KSAALKSKEVKKEPGDEDEDDDEEEEDEEGKKSRLRRRARKERVKKEEVDKLLVPSEDEE
EEGGGEEEDEEGGDESDASAQRIKTIVDSVADAKAGGQSFSDDDDGGEEVKDGPDAASEE
SDDSPENRIAKSMLLQEIMVGKLSGEDSSSEEDDKEDAQAAGKKRSKGDEGGSGDGAEEE
EEDEAEADDDGGGGSDSDFEIPNKSRFRHHLLRHKLVESDSDSARARKGTKEGKEEGDEE
EEDDEERTPKKPRRKPNRGINTADSDDDSEDDEAEEEGSSGSLRKSELDGTTSDSQSDSK
KKKSYKTRSSKKLGEEETQRSYKQKKKRRRIKVQESSSDENSDESDRKRKRRRKKKRKGS
DDEGSSDEEGGSDDDDSKSPGKGRKKIRKIIKDTKLRDETQQALKEEEERRRRVAEREKE
RDKLREVIVIEDEAIAPCPITTKLVLEEDPETHEPVVEVLRSLVCKLKPQPGGRAKSHQV
DGVQFMWDCCIETVKKAKKEPGSGCILAHCMGLGKTLQVVTLLHTVLTNKKLDFDTALVV
CPLNTVLNWQNEFNLWIGNLEEDELEVWELTTVKRVQDRVRLLQEWHETGGIMIMGYEMY
RNLTQGRNIKSKKQREAFERTLVNPGPDFVICDEGHILKNENSAISKAMNAIATRRRVVL
TGTPLQNNLMEYHCMVNFIKENLLGSSKEFRNRFINPIQNGQCSDSTPADVRLMKKRAHI
LYELLAGCVQRKDYTALTKFLPPKHEYVLSIRLTPLQCKLYQHYLDNFTGAAMMGEQSRG
RCGTKLFADYQMLCRIWTHPWCLHLDYISKENKGFYDEDSMDDFIATSDEEEASMSGLGS
DSEPTTSRRKGKKGAGKGGGGDGGRGGGPGGAGGGPSGNDRRGGGGRSSDSDTVEVVKVW
NTRSRRGAGNTRPDDDDVPHVTPKVEKVEENDAKGTAEWFKEFVKEEEAEVIAHSGKLTL
LFETLAMAEELCEKVLVFSQSLISLDLIEDFLEMANKAKAAKKQSPYKGKGKWFRNVDYY
RMDGSTSASLRKKWAEDFNDESNPRGRLFLISTKAGSLGINLVAANRVIVFDASWNPSYD
IQSIFRVYRFGQTRPVFVYRFLAQGTMEEKIYDRQVTKESLSFRVVDQQQVERHFTMNEL
SELYTFEPERLDEPNKKKKRPTPRLPKDKILAEMLQNNRDQIVEYHEHDSLLDHKEEEAL
TEEERKAAWTEYEAEKKGLNLNAKVNSAHSMTSLAMWRMDYAQSLLTASPQQLQEMLNTS
RAQVADAHTRLAQNKLDSAEEILRRVRNTNPTLNESQVLEVCQLVQRNQQADRRRFEANY
QELLARHQMIFQAYQSLAQQTAQLQAQAMLQQQQQQHQQQLLTMQAAAGYRPHMGGLHGL
LQQQQQQQQRGGIGVGGAMPGSSSGVVPQTGDGSQQEPILL
NT seq
8946 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccaaacgaaagagtaagaagctcgactccctggtgcagaagctgcaggacttc
atgactcagtcggtcggcgaggaagaggcggaggcagaaatcatgggctccgacggcaac
gaggaggaggctaacgcggacgcgaagacgtcgtctcttgcggacaagatgaggagagac
aaggacacgagttctcccagtccacaggccggtccctcgcgctcacgaaggaagcccgcg
cacgtcgtcaaggtcatcgcttctgatgacgacaacgacgatctggccgaagaggaagac
gccaggaacaaagagcaaggcaacaacaacaacaacgatgacaacgacgatcttgaggac
ggacaggaggtggatgacgacggtggtggtggtggtggtggtggcgacgacgacgatggt
agcggtggtggcggtggatctaaggggcgagtgggcatggtgcgaggaggaggaggagga
aggaggagggacaaggagagacaagcgacacaagagcaggaggcggaagattctgccgat
gccgccatggatgtctcggaactgcccgaaggcacggtggtggtggagcctgagccggtc
caggatgagaagagggatgccttccggggtccagaattccgaggaggaagtgaaggagga
ggaggaggtggtggtggaggcggaagaggaggaggaggagggagtgaagggaggtccgga
aagtcacgacgattggtgcacggcgcagaggggaccctgcagagcatcgtgtcgtgcaca
gcttgcgggtcgcaggtcaaccacttcatcaaggactcgctgttccgccaccccgtgctc
aaaacgctcatctgcaagagctgctacaagtactacacaagcgatgacatcaaccaagat
gaagaggggatggatgagcagtgcaggtggtgtgccgagggtggcaacctgctctgctgc
gacttctgccacaacgccttctgcaagagctgcgtgctgcgcaacctgggccgcagggcc
ctgcgcgacgtcgtcgccagcggcgacgccaagtgggcctgcttcgtgtgcgacccggcc
cccctcatcgacgtcgtcgccgcctgcgacgccgtcttcgagtccctcgacctccgcggc
aagcgctggcaccaccagaaccggcagcagcagcagcatcggcggcagcagcaggagcag
cagcagcagcagcagcagcaggtccgccaccggcgcaatcgtcacgagaagccgggcaag
cgcggcgagcgcggcgagcgcggcggcggcggcggcggcgacgtgacggtgaggtgcgcc
gaaacgggcgccgcgatcaccgtaccgcgcccgccgatcggcggcggtcaggacgtccgg
aggcagctcatgatccccaaggaggttttccgcaagtcccagaaactgatcgaggcgacg
gtgaacttgagcctgaagtacatcaagttcctgggctcggcgtcgcgcagcggcgacgac
gatgacgccggcgacgccggcgacgccggccaccggggctcgtcgccggagaggctggcg
gtgcgcctgcggaaggcccgggccttccgctcggtgctgtcggagctcaggaaggcccac
gtggccctccaccggagcatggaggaggaggtggccacgcaggcggcctcgatcagggag
ttggaggccaagggggggcgggcgaaggccgcggcggaggtgaaggccgcggcggaggcg
aaggaggaggtggacgaggaggaggaggtgaaggagggcggaagaggagggaagggcgct
aaggaaggaaatagaggagggcggaaggcacaggcagagagccgcccgtcgaaagacaaa
gtcaagggcaggcatcgagcggagagggagggagagaaggtcaacgaggaggtggacgat
gaggtggaggacgaggaggaggacgcggggcggttgcccaaaggtgcgccggcagagcga
cccggcgggaaggaggagccggcgaggggcccggcgtccgagcctcgccgggcggcgccg
ggcggcccctcgccggcgccgcggcaccaccgccgcaagtccctgcgcaccgcccgctcg
caggaggagcccggaggggacgctgcggcggcggctgcggctgcggcggctgcggcggcg
tcgtcgtcggaagaaggaggaggaggaggaggagggagcggcgacgaagagggcgacgga
ggcggccatggtggcgatcgggccgtccgcattggcgccgtcaaaaaaccgaagccgtcg
gcggaagagccggcgccgtcgggcgtcgacgcggcgagcaaagcggaggccggcgacgag
ccgatcgccgccttcaccgcggacttcgactttgacatggcggagcacgccgtggcggac
gactcgtggctgctcgccgagctcagcgacatctcctcctgcgtgcagcccgccgccgac
ggcgacgccggcaaagccgccgacggcaaagccgccgccgatgctggaggcgcggccaag
gccggcggcgacgatcggcaaagcgacgccgcgcggcgggaagaggaggaggtggtggag
gaggaggaggaggaggacgtggagggtgatgatgtggaagaggaggaggaggaggatgag
gatggcggtacaaagagcaaggaaagagcgacaacgaagaagaggaagaagaaggccaac
gggaagaaccgaccgctgtcggcgtcgcgtaaggccaaggatggagacgcaaagagccac
gggaaggaagaggaggaggaggaagaggaggaggaagaaggggaggccgatgaggaggag
gccgatgaggaggaggctgtgacccccgcgaaagagagggctgccagcaagccgtccgcg
ctgtcggagcccagcgtcaagacgggccccgttgtgcggctgaggcctatcaaggccttg
cctgagcagcccctgggcccgacggcgacggaggggggggcgcggtcaccggccaccgac
gacggcggcgccgacgacgattgtgagaacggggagaaggaggaggaggacgaggaggag
gaggaggagggtagacacactcgcgccacgaccgagcgacggaagaaggaacgcggtggc
gacgacgacgacggccgtggccgtggcaagaagacgaggaggagcaagaagacgctggag
aagaaacataaatacgaggaagaggaggaggaggagaaggagaagaagaagcagaaacag
aagaagggagagaagatgagcgagggggaggaggaggagaaggagaagcagaaacagaag
aagggagagaagatgaaggagaagaagaagcagaaacagaagaagggagagaagatgagc
gagggggaggaggaggaggaggaggagaaggagaagaagaagcagaaacagaagaaggga
gagaagatgagcgaggaggaggaggaggaggctggcgccggagaggcgtcggcggacaaa
gtggagtcggaccgccaccgtctgcagcggccgcacgggcagagagagaacggagagcaa
ggggaggtggagttggggaaggaggaggaggagggagatgaggggaaggaggaggatgag
gggaaggaggaggatgaggggaaggaggaggaggatgaggaggatgaggagagccggatg
agatgcggcgacgaggacgcgaggcccaagtccaaacgaaggaagtcgcctcgccggccg
ggcggggacgacaaagccgacgcggcagacagcaagcggtcgcctcggcagaagaccacg
ccgctgcggcgcccctcggccggcgtcgccaagcgcctcctgggggcggccgaggaggaa
ggcgcttggcgtcgccccggcagcagcagcaacaacaacagcagcgacgacgacgccgcc
gagggcgagggcggcggcgaggacgcagcgggcaaggcggaggccgcgtcaccgcgacgc
cccaccaagggtgggcgggccaagcgggggagcaaattggcggcgcgggacgacggcgac
gacggcggcgacgacggcggcgacgacgacggcggcgacgactccgacgagccgccgggg
accgcgacgaaggccgaggatgaggcggacgaggcctcggattcggacgaggtgccgctc
atcctgaggatgtccgcaagggacgccggcgcggccgggcgggcgtcgtccgacgacgac
gacgacgagggggaggaggacgatgagaaggacggcagtggcggcgacgacggggataag
cgaggcgtcgcgaagaaggggaagcgggcggccctggcaagcaagcgcaaagcggggggc
ggcaaggctgcggcgtcgaacgacgaggcggagggcgacgagggcgacgagggcgacgag
gcggagggcgagaagacgacgagccggctgggcaagaagcgcggcaaggcggcggcggcg
gcggcgtcggcgtcgccgtcgcgcgccacgacgaggtcggccagcgccaagcggcggcgc
cggcgatccgactcctccaactacgacccggagctggagcgggagatcggacggctgggc
aagctgcggcccgccaagcgtgccaggacggccaagggcgacgacggcggcggcgacgac
gacgacgacgacgacgacgatgaggtggcggcggcggccgcggcaagaaagaagaggcag
aagagcgcggcgctcaagagcaaggaggtgaagaaggagccgggtgatgaggacgaggac
gacgacgaggaggaggaggacgaggaggggaagaagtctcgcctacgacggagagcccga
aaggaacgggtgaagaaggaagaggtggacaagctgttggtgccgtcggaggacgaggag
gaggaggggggcggggaggaggaggatgaggagggtggggatgaatcggacgcgtcggca
cagaggatcaagacgatcgtggacagcgtggcggacgccaaggccggagggcagtccttc
tctgacgacgacgacggcggcgaggaggtgaaggacgggccggacgccgcgtccgaggag
agcgacgacagcccagaaaacagaatcgccaagtctatgctgctgcaagagatcatggtg
gggaagctgtcgggagaggacagctcatcggaggaagacgataaggaagatgcgcaggcg
gccgggaagaagaggagcaagggagatgaaggaggcagcggtgacggcgcggaggaggag
gaggaggacgaggcagaggccgatgacgacggcggcggcggctccgactcggacttcgag
atccccaacaagtcgcgcttccgccaccacctcctgcgccacaagctggtggagagcgac
tcggactcggcacgcgcacgcaaggggaccaaggaggggaaggaggagggcgacgaggag
gaggaggatgacgaggagcggacgcccaagaagcctcgacgcaaacccaaccggggcatc
aacacggccgacagcgacgacgattctgaggacgacgaggcggaggaggaggggagctct
gggtctctgcgcaagtccgagctggacgggacgacctccgactcgcagtcggacagcaag
aagaagaagtcctacaagaccaggtcgtcaaagaagctgggggaggaggagacgcagcgg
agctacaagcagaagaaaaagcggcgacgcatcaaggtccaggagtcttcgtccgacgag
aactcggacgagagcgatcgcaagcgcaagaggaggaggaagaagaagaggaagggctct
gacgacgagggcagctcggacgaggagggcggctcggacgacgacgactccaagtcgccc
ggcaaggggcgcaagaagatccgcaagatcatcaaggacacgaagctgcgcgacgagacg
cagcaggcgctcaaggaagaggaggagaggcgtcggcgcgtcgccgagcgcgagaaggag
cgcgacaagctgcgcgaggtgatcgtgatcgaggatgaggcgatcgcaccgtgccccatc
accacgaagctcgtgctggaggaggaccccgagacccacgagcccgtcgtggaggtgctg
cgctccctcgtgtgcaagctcaagcctcaaccaggtggacgcgctaagtctcatcaggtg
gacggggtgcagttcatgtgggactgctgcattgagaccgtgaagaaggccaagaaggag
ccggggtctgggtgcatcctcgctcactgcatgggactcggaaagactctgcaggtggtg
acgctgcttcacaccgtgctgaccaacaagaagctcgacttcgacacggccctcgtcgtg
tgtcccctcaacaccgtcctcaactggcagaacgagttcaacctctggatcggaaacctg
gaagaggatgagctggaggtatgggagctgacgacggtgaagcgggtgcaggaccgcgtg
cgcctgttgcaggagtggcacgagacgggcggcatcatgatcatgggctatgagatgtac
cgcaacctcacgcaggggcgcaacatcaagagcaagaagcagcgcgaggccttcgagcga
acactcgtcaaccccggcccggactttgtgatctgtgacgagggccacatcctgaagaac
gagaactcggccatctccaaagccatgaacgccatcgcgacgcgcagacgcgtcgtgctc
acagggacccccctgcagaacaacctcatggagtatcactgcatggtgaacttcatcaag
gagaatctgctgggctcgtccaaggagttccggaaccgcttcatcaaccccatccagaac
gggcagtgctctgactccacgccggccgacgtgcgcctcatgaagaagagggcacacatc
ctctacgagctgctcgccggctgcgtgcagaggaaggactacacggcgctcaccaagttc
ctgccccccaagcacgagtacgtgctctccatccgcctcacgccgctgcagtgcaagctc
taccagcactacctggacaacttcacaggcgcggcgatgatgggcgagcagagccgtggc
cgctgcggcacgaagctgtttgccgactaccagatgctgtgccgcatctggactcacccc
tggtgcctgcacctcgactacatcagcaaggagaacaagggcttttacgacgaagacagc
atggacgacttcatcgccacgtccgacgaggaagaagcctccatgagtggcctggggtcg
gactcggagcccacgacgagtcgcaggaagggcaagaagggcgccggcaaggggggcggc
ggagacggcgggaggggcggcggccccggcggcgccggcggcggccccagcggcaacgac
aggaggggcggcggtggccgcagctccgactcggacacggtggaggtggtgaaggtgtgg
aacacgaggtcgcggcggggcgcgggaaacactcggcctgacgacgacgacgtgccccac
gtcacgcccaaggtggagaaggtcgaggagaatgacgccaaaggcacggccgagtggttc
aaggagtttgtgaaggaggaggaggccgaggtgattgcccactcgggcaagctgacgctg
ctcttcgagacgctcgccatggccgaggagttgtgcgagaaagttctggtgttcagccag
tctctcatctcgctcgatctcatcgaggacttcctcgagatggcaaacaaggccaaggcg
gccaagaagcagagtccctacaaaggcaaggggaagtggttccgtaacgtggactactac
cgcatggacggatccacgtccgcgagtctccgcaagaagtgggcggaggacttcaacgat
gagagcaacccccggggccgcctcttcctcatctccaccaaggcgggctcgctgggcatc
aacctggtggccgccaacagagtcatcgtattcgacgcctcgtggaacccctcctacgac
atccagagcatcttccgcgtctaccgctttgggcagacgcggcccgtgtttgtctaccgc
ttcctggcgcagggcaccatggaggagaagatctatgaccgtcaggtgacgaaggagtcg
ctgtcgttccgcgtggtggaccagcagcaggtggagcgtcacttcacgatgaacgaactc
tcggagctctacaccttcgagccggagcgcctcgacgagcccaacaagaagaagaagcgc
cccacgccgcggctgcccaaggacaagatcctggcggagatgctgcagaacaaccgggac
cagattgtggagtaccatgagcacgactcgctgctcgaccacaaggaggaggaggcgctc
acggaggaggagcgcaaagccgcctggactgagtacgaggccgagaagaagggtctgaac
ctgaacgcgaaggtcaactcggcccactccatgaccagcctggccatgtggaggatggac
tacgcccagtcgctgctcaccgcctccccacagcagctacaggagatgctgaacacgagc
cgggcgcaggtcgcggacgcccacacacgcctagcgcagaacaaactcgactcggccgag
gagatcctgcgcagggtgaggaacacgaacccgacgctgaacgagagccaggtgctggag
gtgtgccagctggtgcagcgtaaccagcaggccgaccggcggcgcttcgaggccaactac
caggagctgctggcgcgccaccagatgatctttcaggcctaccagagcctggcccagcag
accgcgcagctccaggcgcaagccatgctgcagcagcagcagcagcagcaccagcagcag
ctgctcaccatgcaggccgccgcgggctacaggccgcacatgggcggccttcacggcctc
ctgcagcagcagcagcagcagcagcagcgtggcggtatcggtgttggcggcgctatgccc
ggctcgtcctccggtgtcgtgccccagacgggggacggctctcaacaggagcccattctg
ctgtga
DBGET
integrated database retrieval system
