Petromyzon marinus (sea lamprey): 116955779
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Entry
116955779 CDS
T09614
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116955779 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmrn03021
]
116955779 (PCF11)
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116955779 (PCF11)
Transcription machinery [BR:
pmrn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116955779 (PCF11)
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116955779 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
PycTM
Motif
Other DBs
NCBI-GeneID:
116955779
NCBI-ProteinID:
XP_032832989
UniProt:
A0AAJ7UB02
LinkDB
All DBs
Position
61:1373142..1391452
Genome browser
AA seq
1718 aa
AA seq
DB search
MRRRHRRCPRRRRAPRPAGRRRAPAPRAEGGSPPEAAPARPAAGARSPPASKPADKRHEA
PAKAPGKRSDGKDPPFGGERKKEPSSGGDRKKGGDAPDPKKMADASGKDGRKAPRDSARA
SAKPRDRSPPRRSSPSSRRRGRRSPPAWPPGSGRRKTNSPLPASHGARHKSPTPPQAGPA
VATGAAAAAAAAAAAAATSVAAAVLPRATDKRRASQSPAKAGDWPTKRRNLDSPLRATGS
DAGAGGSGRRKGGSPGAPSRSRARERGERGERERGEGVRGSRSPMTEGRLPTKRRRSQSP
RSPRGPAAAATAGGAGGLKKTTPERVPLQANLPVRGPHGKAGWAPAARGAGCAPHPRHGP
EWRRNNKRGSGGGGIVASGGGARDKPPEVEKEPEYLGSPQFSPEPPPSEPDTPNVGEAPH
LHKRFRRSAWEQFKGIRTGQENQPQQQQQQRRDSWGAGVSVHRRFPFPRTPTQHHPRPST
DPELHIPKEITQANKHELLRKADIQRESGLITNEQHMQMVHQLNQLFKLRPRDSSGPRPL
LSEADMAYYQHKASLKQQGKRPPGVHPMAPHGEQPPCDGPRALPTPPPPLRSLADGPWHG
PHAAEPGTFDKRPGKQPVPPPASAGGVSRKPLLMTPTLGRRPPLLGPSPTGLRRGGPQPP
PPPPVPVAATAAAPAPAAAGASTAAAAGGGGADEAAVKREDEERGPADEGRARREQRVEL
PREGSAGPQGPKPPRVRGGQRGEWGGPRRGGTPPEHWVPPREVGERRGKFEKLPGPGAED
PRARRSRDPSPAMDAPYASPHGRPFDSADGFGQRGGAGGGGFNSNSKDNDPPGWWRDEPR
SPSRDDELPPRRFDGPPHPPGRPDGPGDRFSDGPLERFADGPAVGRFTDRPGSRFDGPQG
PVFDGGQRFDGPALDGPNFDGPQGSRFDGPRFDRPQGGHRFDGPQGPRFEGPQGPRFDGP
QGPRFDGPQGPRFDGPQGPRFDNPQGPRFDGPQGMRFDGPRFDGPQGPRFDGMQSQHYDG
PQGPRFDGPQGPRFDGPQGPRFDGPQGPQGPRFDGPQGPQGPRFDGPQGPRFDGPQGMRF
DGPQGMRFDGPQGPRFDGPQGVRFDGPQVPRFEGPQGVRFEGHRFDGPRMLHFEGPQQGL
QSHPGPRFDGPAVPRFDGPRNFDGPGGVGAQFGGQQQQQQQQQQQQRQQQPAFEGPHGQR
FDGGPQFVTQQPGHQPGPFGFPLGAHLQGMAMGPNDHHVGNLGMGIPQHGQQLMGMAHVT
GPRPHFGPGACQPFMPASQVQVAMMSQAMQHGGAIRGPMQHQQLMQHQHRMSMGLMGSDN
HIGQVDVNSLFSKLVASGILQVQTTTNAGTADDARTESNARVTEGAAKKVEEASKEDEEV
DEEEEEDDDDVDMPDLSGFAIEDLKQRYDGVVQRLYSGIQCYSCGMRFTARQTDVYADHL
DWHYRMNRMDKDLSKKVTHRRWYYSLVDWIEFEEIADLEERAKSQFFEQVQEEVVLKTQE
ATREKEFLSVPAGPAGVEELCEICREQFEQYWDEDEEEWHLKNAVRVDSRTFHPTCYEDH
KDSSFDLTPTPTTSTQENPLECALSDAREPDAAVVVNDDGGGDDGDAASHSASLVACGSQ
DSALGSSLEVAPDSAPSEAAPSPESCPTGVAGGAGGGAVPAPGGADEGSDRAGEWPADAA
GTAATATAAGTAAASSPPPAGTEVSAQAADVQVKMETE
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaggagacatcgccggtgcccgcggcgccgtcgcgctcctcgccctgccgggcga
cgccgagcccccgccccccgggccgagggcggcagcccccccgaggcggcgccggcgcga
ccggccgccggagcgcggtcgccccccgcgtccaagccggccgacaaacggcacgaggcg
ccggcgaaggcgccgggcaagcggagcgacggaaaggatccgccgtttggcggcgagcgg
aagaaggagccctcgtcgggcggagaccggaagaaggggggcgacgctcccgaccccaag
aagatggccgacgcgtcgggcaaggacgggcgcaaggccccgcgcgattcggcgcgagcg
tccgccaagccgcgcgaccgctccccgccccggcggtcgtctccgtcgtcgcgcaggagg
ggtcggcgctcgccgcccgcctggccgccggggagcggccgcaggaagacgaactccccc
cttcccgcgtcgcacggcgcgcgccacaaaagccccacgcctccccaggccgggccggcg
gtcgcgacgggtgcggcggcggcggcggcggcggcggcggcggcggccgcgacgtcggtc
gcggcggcggtcctgccgcgggcgacggacaagcggcgcgccagccagtcccccgccaag
gcgggcgactggccgaccaagcggaggaatttggactctccgctcagggccacggggagc
gacgccggcgccggggggagcgggcggcgcaagggaggcagccccggagcgccgtcgcgt
agccgtgcgagggagcgaggggagcgcggcgagagggagcgcggcgagggggtccgtggg
agccgctcgccgatgacggaggggcggttgccgacgaagaggcggaggagtcagtccccc
aggtctccgcgaggcccggcggccgccgccaccgccggcggcgccggcggcttgaagaag
acgacgcccgagagggtgccgctgcaggccaacctgccggtgcggggaccgcacggcaag
gccgggtgggcgccggctgcgaggggggccggctgtgccccccacccacggcacggcccc
gaatggcggcgcaacaacaaacgcggtagcggtggcggtggcattgtcgccagcggtggg
ggggcccgggacaagccccccgaggtggagaaggagccggagtacctgggctcgccccag
ttctcgcccgagccccccccctccgaacccgacacccccaacgtcggcgaggccccccac
ctccacaagcgcttccgccgctctgcctgggagcagttcaaggggatccgcaccggccag
gagaaccaaccgcagcagcagcagcagcagcggagggactcgtggggcgcgggggtcagc
gtccatcgccgcttcccgttcccccgcactcccacgcagcaccaccctcggcccagcacc
gaccccgagctgcacatccccaaggagatcactcaggccaacaagcacgagctgctgcgc
aaggccgatatacagcgcgagtccggcctcatcaccaacgagcagcacatgcagatggtg
caccagctgaaccagctgttcaagctgcggcctcgcgactcctctggcccgcggcccctc
ctgtccgaggccgacatggcctactaccagcacaaggcgagcctgaaacagcagggcaag
cggccgcccggcgtgcacccgatggcgccgcacggggagcagccgccctgcgacggcccg
cgggcgttgccgacccctccgccgccgctccgctccctcgccgacgggccttggcacggc
ccgcacgcggccgagcccggcaccttcgacaagcggcccggcaagcagccggtgccgccg
cccgccagcgccggcggcgtctcccgcaagcccctgctgatgaccccgacgctggggcgg
aggcctccgctgctggggccgtcgccgacgggcctccggagggggggaccccagccgcct
ccgccgccccccgtccccgtcgccgcgaccgccgccgctcccgcgcccgcggccgccggc
gcctcgacggccgcggccgccggcggcggcggcgcggacgaagccgcggtgaagagggag
gacgaggagcgagggccggccgacgaaggccgggcgcgccgggagcagcgagtggagctg
cccagggagggcagcgccggtccccagggtcccaagcctccgcgtgtgaggggggggcag
cgtggcgagtggggtgggcccaggagagggggaaccccccccgagcactgggtccccccg
cgggaggttggggagcgcagaggcaagtttgagaagcttcctggccccggcgcggaggac
ccgcgggcgcggcgctcgcgcgacccctcgccggcgatggacgccccctacgcctctccg
cacggccgccccttcgacagcgccgacgggttcggccaacgtggcggggccggcggcggc
ggcttcaacagcaacagcaaagacaacgacccccccgggtggtggcgcgatgaaccgcgc
agcccttcgcgcgacgacgaactccctccacgccgctttgacgggccccctcacccgccc
ggccgacccgacggtcccggcgacagattttccgacgggcccctggagaggttcgccgac
gggcccgccgtcggcaggttcaccgataggcccggctcgaggttcgacggaccccagggg
cccgtgttcgatgggggccagaggttcgacgggcccgccttggatgggccgaactttgac
gggccgcaagggtcccggtttgacgggcctagattcgataggccgcaggggggacacaga
ttcgatgggccgcaaggacccagatttgaaggcccacagggccccaggttcgacggccca
cagggtcccaggttcgacggcccacagggccccaggttcgacggcccacagggtcccagg
ttcgacaacccacagggccccaggttcgacggcccacagggcatgcgattcgatgggccc
agatttgatgggccgcaggggcccagattcgatggtatgcagagtcagcactatgatggc
ccacagggccccaggttcgacggcccacagggtcctaggttcgacggcccacagggcccc
aggttcgacggcccacagggcccacagggccccaggttcgacggcccacagggcccacag
ggccccaggttcgacggcccacagggccccaggttcgacggcccacagggcatgcgtttc
gatggaccccagggcatgcgattcgacgggccacagggccccaggttcgatgggccccag
ggtgtgcggttcgacgggccgcaagtgcccagatttgaaggcccgcagggcgtccgattc
gaagggcaccgcttcgacgggcctcgcatgctgcacttcgaggggccgcagcaaggactg
cagtctcatccggggccacgattcgatgggcccgcggtccctcggttcgacggcccgcga
aactttgacggcccgggcggcgttggggctcagtttggcgggcagcagcagcagcagcaa
cagcagcagcagcagcagcgtcaacaacagcccgcgtttgaggggccgcacgggcagcgc
tttgacggcgggccgcagttcgtgacgcagcagccgggccaccagccgggcccctttgga
ttcccgctgggtgcccacctccagggaatggcgatggggcccaacgaccaccacgtgggc
aacctcggcatgggcattcctcagcacggccagcagctcatgggcatggcgcacgtcacg
ggaccccggccgcactttggccctggggcctgccagccgttcatgccggcctcccaggtg
caggtcgccatgatgtcccaggccatgcagcacggcggcgccatccgcgggcccatgcag
caccagcagctcatgcagcaccagcatcgcatgtcaatggggctgatgggatcggacaac
cacatcggtcaggtggacgtgaactcgctgttttcgaagctcgtggcctcgggaatcctg
caggtccagacgacgacgaacgccggcacggccgacgacgctcgcaccgaaagcaacgct
cgggtgacggagggggcggccaagaaagtagaggaggcctccaaagaggatgaggaggtg
gacgaggaggaggaagaggacgacgatgatgtcgacatgccggacctctccggcttcgcc
atcgaagacctcaaacagcgctacgacggtgtggtgcagcgcctttactcgggcatccag
tgctactcgtgcggcatgcgcttcacggcgcgccagacggacgtctacgccgaccacctc
gactggcactaccgcatgaaccgcatggacaaggacctgagcaagaaggtcacccaccgc
cgctggtactactcgctcgtggactggatcgagtttgaggagatcgccgatctggaggag
cgggccaagagccagttcttcgagcaggtgcaggaggaggtggtcctcaagacgcaggag
gcgacgcgcgagaaggagttcctgagcgtgcccgccgggcccgccggcgtcgaagagctg
tgcgagatctgccgtgagcagtttgaacagtactgggacgaggacgaggaagagtggcac
ctgaagaacgccgtcagggtggacagccggacgttccacccgacgtgctacgaagaccac
aaggattcgtcatttgacctcactccgactcccacgacctccacccaggagaatccgctc
gagtgcgcgttgagcgacgctcgcgaacccgacgccgccgtcgtcgtcaatgacgacggc
ggcggcgacgacggcgacgccgcctcccactcggcgtcgttggtcgcgtgcggctcccag
gactcggcgctgggcagctcgcttgaagtggccccggactcggctccgtcggaggctgcg
ccgtcgccggagagctgtccgaccggggtcgcgggcggagccggcggaggcgccgtcccc
gcgccgggcggcgcggacgagggctccgaccgggcgggcgagtggcccgccgacgccgcc
ggtaccgccgccaccgccaccgccgccggtaccgccgccgcttcttctccgccgccggcc
ggcaccgaggtgtcggcgcaagccgccgatgtgcaggtcaaaatggagacggagtga
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