Petromyzon marinus (sea lamprey): 116955856
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Entry
116955856 CDS
T09614
Name
(RefSeq) roundabout homolog 1-like
KO
K06753
roundabout, axon guidance receptor 1
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
116955856
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmrn04515
]
116955856
Cell adhesion molecules [BR:
pmrn04515
]
Immunoglobulin superfamily
ROBO family
116955856
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_VEGFR-1-like_5th
C2-set_2
Unc5_NetrinR_N
Ig_PDGFR_d4
FN3_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
116955856
NCBI-ProteinID:
XP_032833070
LinkDB
All DBs
Position
62:complement(4390339..4721350)
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AA seq
1134 aa
AA seq
DB search
MASLTACRVASVLLVIISSSSISSSASGVTSLGADDALPMGIFSDAAGRWEEAEGNALGG
GGGGGGGGGGGGGGGGGGAEATLPSRGDTNHSTAYSGSRLRQEDSPPRIAEHPSDLIVSR
GEPATLNCKAEGRPPPSVEWYKDGERVDTDRDDPHSHRMLLPDGSLFFLRVVHGRRGNRP
DEGTYACVARNYLGEAVSRNASLEVAVLRDDFRQSPADAVVAVGEPAVLECHPPRGHPEP
TVAWRKDGATLATRDERVTTRGGKLMISSARKSDAGKYVCVGTNMVGERESEVAELSVLE
RPSFTRRPVPLVRLLDESAEFACEARGDPLPTVRWRKDDAELPRGRHEIVEEHTLRLRRI
ASGDEGAYSCIAENIVGRAEASATLTVHAPPRFVVRPRDQVAVVGHSVSFRCETTGNPPP
AVFWRRDGGQTLLFPNQPPQPGSRYSVSQSGELSIVDVRLTDAASYSCQALSVAGSVLAK
AVLEVADGLSERPLPLILQSPSNHTALVGGSVRLVCRAVGAPPPAVHWLRGGSRTFTLDP
RVTEPDEGVVQLSDVKPEDAGPYTCVAANVHGETSAVAFVDVKEYTGLIGQGRTADLSKV
PSPPSKPEVTGVTRTSVTLTWQPSGPVPTTSYVVEAYSSQSLGGAWLTVGEGVETTTLVV
RGLRSNSVYIFLVRAANPHGLSQPSALSDPVHTQDVRPTGHSVDPPDMKSVLGDAVIRLL
NPVTISSSSAQLHWTVEKPSPLLHGFQVLYRLVGRGDEGDDEGDDEVAGAGGGGGSPWMS
EEVRGPSERAAVLSGLRKGAAYRVKVRPFHGDVRGDASAGRTLRTPEEAPGAPPQEVRLH
PFTEENNTGVLVSWQPPPEEQHNGVLTEYKVWCGGNDSRLPVIRSVDGSTLSLAIPRLLG
GVRYGLTVAAGNAAGVGPHSEPAYVLLDATSLSGPLEPGDNVSLAEQISDVVRRPAFIAG
IGTACWVVLMVFSVWLYRQRKKRAGLLGSSYASTSKVPSFTFTPSVTYQRGEGNNSTGRS
GLMHVDASHHWLADTWPTAGGGHPHHHHGDCALSCCATAGVSSDSNLTNDHLPNFSQLEV
GKDRDLGCPSSSEAARDFKPSRALNGTAGLPGGLPGAAAAGGPRSAAASAAPGP
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggcatcactgactgcatgtcgcgtggcctcggtgctgttggtgatcatcagcagcagc
agcatcagcagcagcgcgtccggggtgacctcgctgggcgcggacgatgccctgccgatg
ggaattttctcagacgccgcgggacgctgggaggaagcggagggcaacgcgttggggggt
ggaggaggaggtggaggaggaggaggaggtggaggaggaggtggaggaggtggagcagag
gctacgctgccaagccgcggggataccaaccacagcacggcgtactctggctcccgcctg
cgccaggaggactccccgcctcggatcgccgagcatccctccgacctgatcgtgtcgcgg
ggcgagccggcgaccctcaactgcaaggcggaggggcgtccccctcccagcgtcgagtgg
tacaaggacggcgagcgcgtggacaccgaccgcgacgatccacactcgcaccgcatgctg
ctgcccgacggttcgctcttcttcctgcgcgtggtgcacggccgtcggggcaaccggccg
gacgaggggacgtacgcgtgcgtggcgcgcaactacctgggggaggccgtgagccggaac
gcctcgctcgaggtggccgtcctccgcgacgacttccgccagagcccggcggacgcggtg
gtggccgtgggcgagccggccgtgctcgagtgccacccgccacgcgggcacccagagccc
accgtcgcctggcgcaaggacggcgcaacgctggcgacacgtgacgagcgcgtcacgacg
cgcggcggcaagctgatgatctcgagcgcgcggaagagcgatgcgggaaagtacgtctgt
gttggtaccaacatggtgggcgagagggagagcgaggtggccgaactctccgtcctcgag
cgtccctcgttcacccgccgacccgtgccactggtgcggctgctggacgagagcgccgag
tttgcgtgcgaggcgcgaggcgaccccctgccgaccgtgcgctggcggaaggacgacgcc
gagctgcccaggggcaggcacgagatcgtggaggagcacactctgcggctgcggcggatc
gcgagtggcgacgagggggcgtactcctgcatcgcggagaacatcgtggggcgggcagag
gcctcagccacgctcaccgtgcacgctcccccgcgcttcgtggtccgacccagggaccag
gtggccgtggtgggtcacagcgtctccttccgctgcgagaccactgggaaccctccgccc
gctgtcttctggagacgcgacggcgggcagacgctgctgttcccgaaccagcccccccag
ccgggcagccgctactcggtgtcgcagagcggggagttgtccatcgtggacgtgcggctc
acggacgccgcctcctacagctgccaggcgctcagcgtggccgggagcgtcctggccaag
gccgtcctggaggtggccgatggcctaagcgaacgccccctgccactcatcctccagtcg
cccagcaaccacacggcgctggtgggcggcagcgtgcgattggtctgccgggcggtcggg
gccccgccgcccgccgtccattggctgaggggcggctcgcgaactttcaccctcgacccg
cgggtcacggagcccgacgagggcgtggtgcaattgagcgacgtcaagccggaggatgcg
gggccgtacacgtgcgtggccgccaacgtgcacggggagacgagcgccgtggccttcgtg
gacgtgaaggagtacacgggtctcattggtcagggccgcaccgctgacctcagcaaggtc
ccctctcctcccagcaagcctgaggtcacaggggtcacgcgaacctccgtcactctcacg
tggcaacccagcggccccgtgcccaccacctcctacgtcgtcgaagcctacagcagccag
tcgctgggtggcgcttggctgacggtgggcgagggggtggagaccacgaccctggtggtg
cgtggcctgcgatccaactccgtctacatattcctcgtccgagccgccaacccacacgga
ctcagccagccgagcgcactctcggatcccgtgcacacgcaagacgtccgccccacggga
cactccgtcgacccgccggacatgaagagcgttctgggggacgccgttatccgcctcctc
aaccccgtcaccatctcctcctcctccgcgcagctccactggacggttgagaagccttcg
ccgctcctccacggattccaggtgctctaccgcctcgtcggccgcggcgacgagggcgac
gacgagggcgacgacgaggtcgccggcgccggtggcggcggcgggtcgccgtggatgagc
gaggaggtgcgcgggccttccgagagggccgccgtgctatcgggcctccgcaagggggcc
gcgtaccgcgtgaaggtgcggcccttccacggtgacgtgcgcggcgatgccagcgccggg
cggacgctccggacgcccgaagaagcccccggcgcccccccacaggaagttcgtctgcat
cccttcaccgaggagaacaacaccggggtgctggtttcctggcagccacctccggaggag
cagcacaacggcgtgctgacagagtacaaggtgtggtgtgggggtaacgacagtcgtctg
cctgtgatccgctctgtggacggcagcacgttgtcgctcgccatcccgcgcctcttgggc
ggcgtgcgctacggcctcaccgtcgccgcgggcaacgcggccggagtcggaccgcacagc
gagcccgcctacgtgttgctagacgcgacgtcgctgagtggcccgctggagccgggtgac
aacgtgagcctggctgagcagatctcggacgtggtgcgccggccggcgttcatcgccggc
atcggcacggcgtgctgggtcgtgctcatggtgttcagtgtgtggctctaccggcagcgg
aagaagcgagcggggctgctcggctcgtcctacgcctccaccagcaaggttccgtctttc
acattcacgccgtcagtgacgtatcaacgcggcgaaggcaacaacagcactggcaggtcg
ggcctgatgcacgtggacgcgtctcaccactggctggccgacacgtggcccactgccggg
gggggccacccccaccaccaccacggtgactgtgccctcagctgctgtgccaccgccgga
gtcagcagcgacagcaacctcacaaacgaccacctgcccaacttctcccagctggaggtg
ggcaaggaccgggacctgggctgcccctcctcctccgaggcggcccgtgacttcaagccg
tcgcgggccctcaacggcacggccggcctccccggcggcctccccggcgccgcggccgcc
ggcgggcctcggtccgctgccgcgtcggcggccccggggccatga
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