Petromyzon marinus (sea lamprey): 116956227
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Entry
116956227 CDS
T09614
Symbol
DDX17
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17 isoform X1
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116956227 (DDX17)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116956227 (DDX17)
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116956227 (DDX17)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116956227
NCBI-ProteinID:
XP_032833559
UniProt:
A0AAJ7UC46
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All DBs
Position
3:19092424..19102567
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AA seq
693 aa
AA seq
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MPGYSDRDRGDRDRGRDRWGRDSSPRFGSSRGFGGGDRGGGGGGGMRKFGQPGEKLRKVK
WDMSKLPRFEKNFYVESPNVVRRSQHEVDEYRRKKEITVKGQSCPKPVFSFEEASFPSYV
MDVIKQLNFKEPTPIQAQGWPLALSGQDMVGIAMTGSGKTLAYLLPAIVHINHQPFLERG
DGPVVLVLAPTRELAQQVQQVAQDYGRLSRIKSTCVYGGAPKGPQLRDLERGVEICIATP
GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRTIVDQIRPDRQTLMWSATWPRE
VRQLAEDFLKSYIQINVGSIELSANHNILQIVDVCMDSEKDSKLIRLMEEIMAEKENKTI
IFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRTGKAPILIATDVASRGL
DVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPSNLRQANDLVNVLREANQ
AINPKLLELAGGARGGKGRSRYRGGGGGGGSYRDDSDDDRRDRFGSRFGSGRDRDRDRGG
RDRDSGSSRDRGYGLSGGNRDSGSNRDADSNSSQSQMLQKSLLGLAPQGGLSLIGQPGLL
GLIPSFSAARDGKLAQVGGDQSSQQSAQQQQFLTASTPQISTLLAQQYSQYQSPMPLMSL
NFIPDINQANFCLPTNGVVPPPPPPPPPPGVKN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtacagcgatagagatcgcggcgatagagatcgcggccgcgacaggtggggt
cgtgattccagcccgcgcttcggcagcagccgcgggttcggtgggggtgaccgcggtggt
ggcggcggcggcggcatgaggaagttcgggcagcctggcgagaagttgcgcaaggtcaag
tgggacatgagcaaactcccacgcttcgagaagaacttctacgtggagagtcccaacgtg
gtacgccggagccagcacgaggtggatgagtacaggcggaagaaggagatcacggtgaaa
gggcagagctgtcccaaaccggttttcagtttcgaggaggccagcttcccttcctacgtg
atggacgtcataaagcagctgaactttaaggagcccaccccaatccaggcacagggatgg
cccttggcgttgagcgggcaggacatggttggcatcgccatgacgggctcaggaaagacc
ctggcttatttgcttccagccatcgtgcacattaaccaccagcccttcctggagcgtggc
gatggcccagtggtgctggtgctggcaccaacgcgtgagttggcacagcaggtgcagcag
gtcgcgcaggactacggccgcttgtcacgcatcaagtccacgtgcgtgtacggtggagcc
ccaaagggcccacagctgcgcgaccttgagagaggagttgagatctgcatcgccaccccg
gggcgcctcattgacttcctggagtcgggcaagacaaacctacggcgctgcacctacctg
gtgctggacgaggccgatcgcatgttggacatgggcttcgagccacagatccgcaccatc
gttgaccagatccggccggaccggcagacgctcatgtggagcgccacgtggccccgggag
gtacgacagcttgcagaggacttcctgaagagctacatccagatcaacgtgggctccatt
gagctatcggccaaccacaacatcctgcagattgtcgacgtgtgcatggacagcgagaaa
gacagcaagctgatccgcctgatggaggagatcatggcagagaaggaaaacaagacgatc
atctttgtggagactaaacggcgtgtggatgacctgacacggaggatgaggcgcgacgga
tggccggcaatgtgcattcatggagacaaaagtcagccggagcgagattgggttctgagt
gaattccgcactggcaaggcccccatcctcattgcgactgacgttgcttctagaggacta
gacgtggaagacatcaaatttgtcatcaattacgactacccaaactcgtcggaggactat
gtacaccgcataggccgcacagctcgcagcaccaacaagggcactgcctacaccttcttt
actccatccaacctccgccaggccaacgacctggtgaacgttctacgagaggccaaccag
gccatcaaccccaagctgctagagctggctggcggggcccgtggaggcaaaggtcgctcc
cggtaccgtggtggtggtggaggtggcggcagttaccgcgatgacagcgatgacgatcga
cgtgatcgcttcggaagtcgttttggctccggccgagatcgcgaccgagaccgtggtggt
cgggaccgcgatagcgggagcagtcgggatcgtgggtacgggttatcaggagggaacaga
gactctggctcgaaccgagatgctgacagtaacagcagccagagccagatgctgcaaaaa
agcctgctagggttagcaccacaaggtggtctatccctaataggccagccaggtctcctg
ggactgatcccttctttctctgctgccagggacggtaagttggcccaggtgggtggggac
caaagctcgcagcagtcagcacagcagcagcagtttcttacagcgagcacgccccaaatc
tcaaccctccttgcgcagcagtacagtcagtaccagtcacccatgccgctcatgagcctc
aacttcattcctgacataaaccaggcgaacttctgtttgcctacgaatggtgttgtaccc
cctcctcccccaccccctcctcccccaggagttaaaaactga
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