Petromyzon marinus (sea lamprey): 116956298
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Entry
116956298 CDS
T09614
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04382
Cornified envelope formation
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116956298
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116956298
09142 Cell motility
04820 Cytoskeleton in muscle cells
116956298
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116956298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmrn04147
]
116956298
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116956298
Exosome [BR:
pmrn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116956298
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116956298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116956298
NCBI-ProteinID:
XP_032833692
UniProt:
A0AAJ7XGV4
LinkDB
All DBs
Position
64:4164638..4330843
Genome browser
AA seq
1713 aa
AA seq
DB search
MGDARRLLVALAMVLATVMHFVEAGVKVFPGACGGRDCAGGCKCFPEKGARGQPGMLGPQ
GPKGFLGTPGPEGIPGPKGLKGDTGSPGLTEGDGDPGPIGVPGFPGIHGTPGHPGQPGSR
GYPGADGCNGTRGDSGLPGQGGSHGTPGQAGIVGPKGQKGDPATPPPSLKGMKGIRGKQG
SNGLPGSSIPGFPGQIGPRGPPGYPGTPGPPGLPGEKGNRGVELRGMTGEKGEVGPPGPP
GRFAVPLKGSRPSYLLKGFKGEQGEPGAQGLPGKIGEAGPDGPQSAASGKGEKGITGLPG
SRGDNGFDGTPGFPGQRGVSGVPGVPGKDGKPGVKGDRGSEGAPGPTTYITGRDSIRTGQ
TGEPGSKGPTGLQGEAGSQGPPGNAGLPGPPAFSPAPKGLPGIFGTPGYAGEKGDPGRPG
YGLPGLPGRDGLPGEPGLPGPAGLPGLFIPGDNTNITLLIGAPGSPGASGPSGHPGIKGP
TGDPGDCECGDGDGPGMLKGPPGPPGFQGDPGSPGLQGGRGDAGSPGPQGLPGASGPSGL
PGRPGPPGLKGIKGDPYIPTTKGQKGLPGTAGEDGFPGQPGLKGRDGTPGRPGPKGPPGD
GGQGLPGDEGTKGVPGTSGQPGPPGPPGDGFPGAVGPRGDPGSPGRDGPQGPQGNKGQAG
DPGCCNCTEDRVGQGGETEECMVQPPRGEPGPPGLTGPQGPKGSPGFAGEPGMPGFKGIR
GQPGDPGPSGAMGPPGSAGATGDRGPPGFPGQEGVHGRPGKTGTAGPPGRRGPPGEVRVG
QPGLPGEPGRTGPLGSRGESGQPGVEGQKGNDGTAGRAGLKGPKGDSGQPGQPGRPGPAG
PQGGPGLPGTSGSTGPPGPFGRPGPAGQKGSPGDEGYPGPQGAKGLTGPPGFPGPPGKLG
SVGSSGVPGIAGMPGKDSTKGAKGSAGMAGFPGVPGARGPQGLPGQIGPQGPVGSKGLRG
QTGSQGQKGSRGEEGPPGPPPVFLKAEINGIPGDRGELGTPGVSGETGEKGMPGFQGSPG
IPGLPGTPSFNKGEVGAPGIPGKPGLPGDVGPAGTRGISGFPGMPGQQGELGSQGPSGPP
GNDGLQGPKGDPGDATAIPGSPGSRGEPGLPGQPGGHGFEGDLGQRGPSGLPGVLGAKGT
RGDPGRAGAAGFAGNPGSPGLLGAAGSEGQPGPRGTPGPTGPTGQKGSRGSPGTDGLDGV
PGKKGLQGSPGSSLPGSEGLSGPRGPKGVPGIPALGIGPQGIPGEKGVKGDIGCSGEPGV
EGPPGPIGAQGFPAPLPGEEGDQGPPGSQGFPGPRGKFGPSGTPGLTGAKGVGGPPGDNG
PDGPAGPAGNSGRPGGPGPPGIAGLKGPRGDTGSQGPTGTRGFPGDPGSAGTKGSTGPTG
VAGGQGPPGPPGKPMKVQAARGSNGLPGTPGQMGFKGDAGAKGLQGQSGDRGNRGLPGLN
GRDGRPGAAGSPGDPGNSGFPGKIGPQGSAGRSGTPGPAGMPGRGMNVGFLLVKHSQTDG
VPMCPVGMGRVWDGFSLLYVEGSEKAHNQDLGLAGSCLPRFSTMPFVYCNINEVCNYASR
NDKSYWLSTTAPIPMMPVADDDIRPYVSRCAVCEAPAQAIAVHSQDVSIPPCPVGYRSLW
IGYSFLMHTAAGAEGGGQSLASPGSCLEDFRATPFIECNGARGTCHFFANKYSFWLTAVE
EAQQFADAPRPETLKAGQPRTRVSRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgggagatgcaaggcgactactggtggcgttggcgatggtgctggccacggtgatgcat
tttgtggaggctggagtgaaggtgttcccgggagcgtgcggaggccgcgactgcgcagga
ggatgcaagtgcttccccgagaagggggcgagggggcagcccggcatgctgggccctcag
ggaccgaagggattccttggcacgccggggcccgagggaattcctgggcccaagggcctc
aaaggggacacggggtcgcccggcctgacagaaggggacggagaccccggccctattgga
gtacctgggtttcctggaattcacgggacccctggtcacccggggcagccgggctcacgg
ggctacccaggggccgacggctgtaacggcacgcgaggggactcgggcctcccaggccag
ggtggctcacatggaacacccggccaagcgggaattgtgggacctaaaggccagaaggga
gacccagcaacccctcctccttcgctcaagggcatgaagggcatacgtgggaagcaaggt
tcgaacggcctcccgggatcatccattccgggttttccaggtcagataggaccgaggggc
cctcctggatatcccggcacgccagggccaccggggcttccgggcgagaaggggaaccgt
ggcgttgagctgcgcggcatgacgggagagaagggagaggtcggtccccccgggcccccc
ggacgcttcgccgtcccgctgaaggggagccgacccagctacctgctcaagggcttcaag
ggcgagcagggagagccgggagcccagggcttaccgggaaagatcggagaggctggacct
gacggtcctcagagtgctgccagcgggaagggagagaagggaatcacggggctgccgggg
tccaggggagataatggtttcgatggaactcctggctttcctggccaaaggggtgtcagc
ggtgtccccggagtcccgggtaaagacggaaaacctggggtgaagggggaccgagggagt
gaaggcgcccctgggcctacgacctacatcacaggacgggattctatacgaacaggccag
acgggagaaccaggttccaagggccccactggactacagggggaggcagggtcccagggc
ccgccaggcaacgctggcctacctggtcccccagcctttagcccagccccaaaggggttg
cctggaatcttcggcacgcccggctacgcgggggagaagggcgaccctggccggcccggc
tacggattgccgggtctgccgggcagggacggcctccccggagagcccggtttgcctggc
ccggcgggcctgcccggcctcttcataccaggagataacacgaacatcactctgctcatt
ggtgcacccggcagccctggcgcgagcggacccagcggccaccctggaataaaggggccc
acaggtgacccaggagattgtgaatgcggcgatggggatggtccaggcatgctgaagggc
ccgcccggtccccctgggttccaaggtgaccccggaagccccggactccagggcggcagg
ggagacgcagggagccctgggccccaagggctgccgggtgcatcggggcccagcggcttg
cctggacgacctggacccccagggctcaaagggataaagggcgacccctatattccaaca
accaaaggacagaaggggttgccgggaaccgcgggagaggacggattcccagggcagccc
ggcctgaaggggcgagacggaacgccggggcgaccgggacccaagggcccgccgggcgac
ggtggccaagggctgccgggagacgagggcacgaagggcgtccctgggacgtcgggtcag
cccgggcctccgggcccgccgggcgacggctttccgggggccgtggggcctcgtggggac
cctgggagtcccgggcgcgatggcccacaggggccacagggaaacaagggccaggcaggt
gatccgggctgctgtaactgcactgaagaccgggtggggcagggaggagagaccgaagag
tgcatggtgcaacctccgaggggagagcctggaccgccaggcctgaccggacctcaaggt
cccaagggctcgccggggttcgctggggaaccggggatgccagggttcaagggcattcgg
gggcagccgggagatccgggtccatccggggccatggggcctccaggatccgcgggagcc
acgggggataggggacccccaggcttccccggccaggaaggtgtccacgggcgacctggt
aaaactggcacggcgggcccaccggggaggagagggccaccgggggaggtgcgcgtgggc
cagccgggcttgcccggagagccgggacgcacggggccactggggtcacgtggggagagc
ggtcagcccggcgtggaagggcagaagggaaacgacggcactgcagggcgggcgggactc
aaagggccgaagggcgactctgggcaaccaggacagccgggccggccgggccccgcaggt
cctcaagggggcccgggcctgcccgggacctcgggctccacggggccacctgggccattt
ggaagaccaggccctgctggacagaaaggcagccctggtgacgagggctatccaggccca
caaggagcgaagggactgaccgggccaccgggttttcctggcccaccgggaaagctgggc
tcggtaggctcctcgggagtgccgggcatcgctgggatgcccgggaaggacagcaccaaa
ggtgccaagggcagtgcgggcatggctggattccccggggtgcccggggcaaggggccca
cagggcctcccaggccagattggcccacaaggcccagttggcagcaagggcctccggggc
cagacgggcagccaagggcagaagggttcccgcggggaggagggcccccctggacccccg
ccagtttttctcaaggcggaaattaacggcattccgggagaccggggagaactgggaacg
ccgggcgtttctggggaaacaggtgaaaaggggatgcccggattccaggggagcccggga
atccccggcctcccaggcactcccagcttcaacaagggggaggtgggagcgcctggcatc
ccgggcaaaccgggccttcccggcgacgttggccctgccggcacccgtggcatctcggga
ttccctggcatgccgggacagcagggtgaactgggctctcaggggccttcaggcccacca
ggaaacgatggactccaaggcccaaaaggggaccccggagatgccactgccatacctgga
agccccgggtcaaggggcgaaccaggcttacctgggcagccaggtgggcatggttttgag
ggcgacctgggccagaggggaccgagcggactgccgggggttctgggtgccaaggggacg
cggggagaccccggccgtgcgggtgcagccgggttcgctggaaatccaggcagcccgggt
ttgctgggcgccgcggggtctgagggccaaccagggcctcgtggcactccaggcccgaca
ggacccaccgggcaaaaaggttcccgtggatctccggggacggacggactggatggagtc
cccgggaaaaaggggctccagggatctccgggctcctcgctgcccggatctgagggcctc
agtggtccccgtggtcccaagggcgtgcctgggatcccggccctgggaatcggtccccag
ggcatccccggggaaaagggagtcaagggagacattggctgctctggtgaaccgggtgtc
gagggtccccctggtcccattggagctcaaggtttccctgctcccctgccaggcgaagaa
ggggaccagggtcccccaggatcacaaggatttccaggtccaagaggcaagtttgggccc
tccggcacacccggcctcactggagcgaagggggtgggggggccacccggagataatggg
ccggacggcccagcagggcccgcgggcaacagcggacgacctggcgggccaggccctcct
gggatcgccggcctaaagggaccgcggggagacactggctctcagggtcccaccggaacg
cggggtttcccgggcgatccaggatccgctggaacaaagggaagcacggggcctacaggc
gtagcgggcggccagggccctccaggcccgcccgggaagccaatgaaggtccaagcggcg
cgcgggtccaacggccttcccggcaccccgggtcagatgggcttcaagggcgacgctgga
gccaagggcctgcagggccagtcaggggatcggggcaaccgtgggctgcccggcctgaac
ggtcgggacgggcggcccggcgccgcggggtcgcccggtgaccccggcaactcggggttc
cccgggaagatcgggccgcaaggctcagcgggccggagcggaactccgggcccggcgggg
atgccgggccgcggcatgaacgtgggcttcttgctcgtgaagcacagccagacggacggc
gtgcccatgtgccccgtgggcatgggccgagtgtgggacggcttcagcctgctgtacgtg
gagggcagcgagaaggcccacaaccaggacctggggctggccggctcctgcctgccgcgc
ttcagcaccatgcccttcgtctactgcaacatcaacgaggtgtgcaactacgcgtcgcgc
aacgacaagtcctactggctctccacgacggcgcccatcccaatgatgcccgtggccgac
gacgacatccggccgtacgtcagccgctgcgcggtgtgcgaggctccggcgcaggccatc
gccgtgcatagccaggacgtgagcatcccgccgtgccccgtgggataccgcagcctctgg
atcggatactccttcctcatgcacacggccgcgggcgcggagggcggcgggcagtcgctg
gcgtctcccggctcgtgcctcgaggacttccgcgccactcccttcatcgagtgcaacgga
gcccgcggcacctgccacttcttcgccaacaagtacagcttctggctcacggccgtggag
gaggcccagcagttcgccgacgcgccgcgcccggagacgctcaaggccgggcagccgcgc
acccgcgtcagccgctgccaggtgtgcatgaagaacctctag
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