Petromyzon marinus (sea lamprey): 116956299
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Entry
116956299 CDS
T09614
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04382
Cornified envelope formation
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
pmrn04518
Integrin signaling
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116956299
04518 Integrin signaling
116956299
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116956299
09142 Cell motility
04820 Cytoskeleton in muscle cells
116956299
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116956299
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmrn04147
]
116956299
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116956299
Exosome [BR:
pmrn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116956299
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116956299
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116956299
NCBI-ProteinID:
XP_032833694
UniProt:
A0AAJ7UCD2
LinkDB
All DBs
Position
64:complement(4048040..4156637)
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AA seq
1691 aa
AA seq
DB search
MRPSSALQAPLVLLVLLALLRGCLGKACHGCSSGSSCDCSGAKGDKGASGLPGLQGPQGL
PGFSGPEGPPGPEGGKGDQGDTGHAGPKGFRGAPGTPGFPGTPGMPGLNGQDGPMGPPGI
PGCNGTKGDVGLPGSNGAPGLMGPRGIPGLPGLKGDPGDFLPAFPGQKGDSGLPGLPGNA
GNPGGVGLPGPIGPPGPPGFPGPSGQPGPPGPKGHMGLNFQGPKGDKGESGLQGPPGPPG
HIREQQGIVDITDGFQKGQKGEVGEPGKPGFDGQPGPPGRPGFGQKGEKGDFGEAGKRGK
PGKDGDSGLPGIDGEPGIPGIPGIDGLDGEKGRKGDAGIAGPPGKVVSVAGSGDVTTAQK
GDVGFPGPPGDKGERGFPGPIGLQGTPGPPGPSSKGSPGIPGQPGTRGDKGLPGDPGPII
PGARGVDGQPGLPGNPGIPGPPGPPATVPPDFGSTGKGIPGPPGQAGHPGTPGIAGIKGD
KGATCQSCGQVPVRTLPGVPGPQGPPGPPGQPGSPGGSGPKGDSGFPGSPGLQGPQGSPG
VPGHPGDSGEKGEPGDASSFEGLAGDKGEPGSSGMPGSPGASGLPGLDGQPGSPGPKGDP
APFGFKGEQGPPGSAGMPGTPGERGPPGSPGFGPSGLPGQKGTDGIPGRAGMEGPTGGKG
EPGRTLGQPGFPGLPGSPGEMGPSGSPGMPGIPGTPGLQGEQGVKGDAGFPGFGMPGATG
QKGVVGVPGPSGGPGAAGRPGQDGTPGQPGPAGPKGESGVGAPGLRGPPGVPGQGGLPGT
KGEQGSPGLPGMPGRPGMDGVPGSRGEGGSPGIPGHQGLPGLKGFGQPGSPGLPGQPGPT
GKEGSPGIAGSKGDPGPPGLDLTGPPGDKGSPGFPGVPGQMGPPGPMGVPGKDGIPGNSG
AKGEMGVMGTPGPQGPVGQVGGPGLAGPTGIAGQHGPPGDAGHGGAKGDKGERGLPGSPM
TIADKQLLQGPKGEKGQEGKSGQAGQKGSPGPPGLPGNPGAEGLRGTDGSAGPKGNPGSD
GFSGQPGPPGQKGSMGEMGLPGPSGGVGIPGPPGKPGLPGSQGQLGLKGDKGNSGAPGIG
APGLLGVQGEPGKPGQPGAPGLKGSTGLPGMPGAPGKDGPKGDAGIGGLPGDSGREGPKG
QVGLSGSPGQPGPPGPPGIGGQPGFPGSPGEKGSIGRDGIPGTIGSRGDPGPPGLGTPGP
PGSPGHPGEKGDPGIPGHVGPPGMQGPKGEEGQKGFYGPPGQQGPPGAPGQVTDGAKGNA
GPAGLPGLPGPEGVTGFPGTPGVGGQKGEQGGPGSRGSPGFPGPPGESGPPGLLGAQGRP
GLDGTKGDPGPQGTVGFPGEKGVPGQPGTRGNPGETGPVGPIGPPGIAGTPGEVTIIKGD
PGQPGSIGFQGPKGPPGRQGDTGPKGFVGPDGPPGQDGFPGIDGSQGPKGNMGTSGDPGE
VGRPGPQGVDGMPGSRGPPGKASMPHGFLVTRHSQAKSVPSCPQGTEKVYDGYSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFVFCNLNNVCNFASRNDYSYWLSTPEPMPMSMAPVTG
PHVEPFISRCSVCEASAMVIAVHSQSVTVPPCPEGWASLWFGYSFMMHTSAGSEGSGQAL
ASPGSCLEEFRSTPFIECHGRGTCNYYANSFSFWLATIDGSNMFRKPQSETLKAGDLRSR
ISRCQVCMRRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcggccatcgagcgcgcttcaggcgccgttggtgctgctcgttcttctcgccctgtta
cgcggctgccttggcaaggcgtgccacggctgttcctcaggatcgtcatgcgactgcagt
ggagcgaagggagacaagggtgcatcaggcctcccaggcctgcagggacctcagggactg
ccaggattttcagggcccgagggcccacctgggccagagggcggcaagggcgaccaggga
gacacgggccacgctgggcccaagggcttcaggggagcaccaggaaccccagggtttcca
gggacaccaggcatgccgggcctcaatggacaagacgggcccatggggcctcccgggatc
ccaggatgcaatgggaccaagggagacgttgggctgcctggtagcaacggagcgcctggg
ctaatgggacctcggggaattcctggattgcctggattaaagggcgaccccggtgatttt
ctgcctgcgttcccgggacaaaagggcgactcaggccttccaggcctccccggaaatgcc
ggcaatcctggaggtgtagggctgccgggccccatcgggcccccaggccctcccggattt
ccaggaccgtcaggccagcctgggcctccaggacccaagggacacatggggctcaacttc
caaggccccaaaggagataagggggagtcagggctgcagggtccgccgggacctcccggc
cacatccgcgagcagcagggcatcgtcgacatcaccgacggcttccagaaggggcagaag
ggtgaagtgggcgagccaggcaaaccaggcttcgacggtcaacccgggcccccgggacga
ccgggctttggtcagaagggagagaaaggtgactttggagaagctggcaagagggggaag
ccaggaaaggatggggattcaggactgccaggaatcgatggagagcctggtatcccaggg
attcccggcattgacggcctggatggcgaaaagggtcggaagggagacgctggcatcgca
gggcctccgggaaaagtggtctcggtcgccggcagcggtgacgtcaccaccgcccagaaa
ggggacgtcggattcccgggaccccccggggacaaaggggagcgcgggtttccaggtccc
atcggtctccagggcacgcctgggcctccgggcccatcgtccaagggttctccaggcatc
ccaggccagcccgggactagaggggacaaaggtcttccaggagacccaggccccatcatc
cctggagccaggggagtggatggtcagccaggtctccccgggaatccgggtatccccgga
ccacctgggcctcctgctacggtgcctccggactttggcagcactggcaaggggatccct
gggcctccgggacaagcggggcatcccggtactcctggcatcgccggcattaaaggggac
aagggggccacgtgccagtcgtgcggtcaagtgccggtgaggactttgccgggcgtgccg
ggacctcaaggaccaccggggccccccggtcagccagggagtccaggcggcagtgggccg
aagggcgacagcggcttccctggctctcccggcttacagggacctcagggcagcccgggg
gtgccgggccaccccggggactctggtgagaaaggggagcccggggatgcgtcctccttc
gaggggctcgccggggacaagggcgagcccggctcgtcgggtatgcccgggagtccgggg
gccagcggcctccctggcctcgacgggcagcctgggagcccaggcccaaagggggacccg
gcaccgttcggattcaagggagagcagggccccccgggctccgcggggatgccggggaca
cccggggaacgcggccccccaggatctccaggattcgggccctcggggcttccagggcag
aagggaactgacggaattccggggcgggccgggatggaaggaccgaccggtggcaagggg
gagcccggcaggacactgggccagccgggattccccggcctaccgggctctcctggggaa
atgggaccctccggctccccaggcatgccggggatccccggcaccccggggctgcagggg
gagcagggagtgaagggtgacgccggcttccctgggttcgggatgccgggggcgaccggg
cagaaaggcgtggtgggcgtcccggggccttcgggagggccgggcgcggcgggccggccg
ggacaggatggcaccccagggcagccgggcccagcgggacccaagggggagtctggcgtc
ggagcgccgggtctccggggaccaccgggagtgccgggccagggcgggttgcccggcacg
aagggggagcagggatccccgggcctaccggggatgcccggccggcctggcatggacggc
gttcccggaagcaggggggagggggggtctccgggcatccccgggcaccaagggcttccc
ggcctcaagggatttggacaacccgggtcacctggcctacccggccaacctggcccaacc
ggcaaggaaggttctcctggcattgctgggagcaagggtgacccgggccctccgggccta
gacctgaccgggcctcccggcgacaagggcagcccgggcttccctggcgtgccaggccag
atggggccgccgggtcccatgggcgtcccggggaaagacgggattcctggaaactcggga
gccaagggggagatgggggtcatgggaactcctgggccccaaggccccgtggggcaggtg
gggggtcctggcctcgctggccccacaggcatcgcgggtcagcacgggccgccgggcgac
gcgggacacgggggcgccaaaggagacaagggggagcgaggactcccggggagccccatg
accattgccgacaagcagctgctacagggcccgaagggcgagaagggacaggaggggaaa
tcgggccaggctgggcagaagggatcaccgggacctccgggtttgccggggaaccccggg
gccgagggtctccgcggcacggacgggagcgcagggcccaaggggaacccgggttctgac
ggtttctcagggcagccaggcccacctggccagaagggctccatgggagagatgggcctc
ccaggacccagtgggggtgtggggatccctggcccccctgggaagccaggtttgcctggc
agccaggggcagttgggactcaagggagacaaggggaactccggcgcgcctgggatagga
gctcccgggctgctcggagttcagggagagccaggaaagccgggccagccaggggctcct
ggactcaaggggtccacgggcctaccagggatgcccggagctccggggaaagatggcccc
aaaggagatgcgggcatcggtggcctcccaggagacagtggcagggagggtcccaaagga
caggttgggctctcaggcagccctggtcaaccaggcccccctgggcctccaggtatcgga
ggacagccgggatttcctggttctcctggggagaagggatccattggcagagacggaatt
cccggcaccatcggcagcagaggggatccaggccctcctggcctcgggacgcctggaccc
cccggttcacctggccaccccggcgagaagggcgaccccggcattccgggccacgtgggc
ccacccgggatgcagggccccaagggcgaagagggccagaagggattctacgggccaccg
ggccagcagggccctccgggcgctccgggccaggtcactgacggtgccaaggggaacgcc
gggccggccgggctgcctgggcttcccggccccgagggggtgactggcttcccagggacg
cctggagtcgggggacagaagggcgagcaaggcggccccggcagccgcggctcccccggg
ttcccggggcccccgggcgagtcgggcccccccggcctgctgggagcccaggggcgaccc
ggcctggatggaacaaagggagacccgggaccccaagggactgtgggattcccaggagag
aagggcgtcccgggacagcctggaacacgcggaaaccccggggagacgggaccggtcggg
cccattggtcctcccggaatcgctgggacacctggagaggtcaccatcatcaagggagac
ccggggcagccaggatcaattgggttccaagggcccaagggacctcctggtcgtcaagga
gacactggccctaaaggtttcgtgggccctgatgggccgcctggccaggacgggttccct
gggatcgacgggagccaggggcccaaaggcaacatgggtacttcaggcgacccgggcgag
gtgggtcgtcccgggccgcagggcgtggacgggatgcccggctcgaggggccctcccggc
aaggcctccatgccgcacggcttcctggtgacgaggcacagccaggccaaaagcgtgccc
agctgcccccagggcaccgagaaggtctacgacggatactcgctgctctacgtgcagggc
aacgaacgcgcgcacggacaggacctgggcacggcgggcagctgcctgcgccgattcagc
acgatgcccttcgtcttctgcaacctgaacaacgtgtgcaacttcgcgtcgcgcaacgac
tactcctactggctgtccacgcccgagcccatgcccatgagcatggcccccgtcacggga
ccccacgtggaacccttcatcagcaggtgctcggtgtgcgaggcatcggccatggtgatc
gccgtgcacagccagtccgtcacggtgccaccgtgccccgagggatgggcttccctgtgg
ttcggctactccttcatgatgcacacgagcgccgggtcggagggctcgggccaggcgctg
gcgtcgccggggtcgtgcctggaggagttccgctcgactcccttcatcgagtgccacggg
cgtggcacctgcaactactacgccaactccttcagcttctggctcgccaccatcgatggc
agcaacatgttccggaaaccgcagtcggagaccctcaaggccggcgacctgcggtcacgc
atcagccgctgccaggtgtgcatgcgtcgcacgtag
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integrated database retrieval system
