Petromyzon marinus (sea lamprey): 116956544
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Entry
116956544 CDS
T09614
Name
(RefSeq) C-myc promoter-binding protein-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116956544
Membrane trafficking [BR:
pmrn04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
116956544
BRITE hierarchy
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
PPR_3
DUF2464
PPR
Death
PPR_long
Cm_res_leader
Motif
Other DBs
NCBI-GeneID:
116956544
NCBI-ProteinID:
XP_032834163
EnsemblRapid:
ENSPMAG00000003553
LinkDB
All DBs
Position
1:18867840..19005612
Genome browser
AA seq
1761 aa
AA seq
DB search
MERLDQRTCRYDGLCSSMLEEKGPRVADYFVLAGLTDTSRPLEEEMSQSDGGPRTARPKA
PITDVAVIVKSHGEEVPQGFTCIESTPLGLPADLNHGSLKSPQIYLCYRRGRDKPPLTDL
GVLYEWKDRLRPGCELVETTPYGRCANVNNSSAVSQRILLTFRRATDQNAQNTLAVTDIC
VIVANKGESPPHTFCKVDRNLNSGMWGSDVYLCYKKSLVKSNAIAYKAGLISRYPVGDYE
SFQLPESVPLFCLPLGATIECWQANTKYPMPIFSTFVLTGSSAEKVYGAAIQFFEAYPGE
RLTDRQKTQLGMLSAVDHKPIAGKVAHASKSICLLSHWPFFEAFHKFLLFLYRLSVSGPN
LIPIEKHISHFMHNTPFPSPQRPRILVQLSPHDSLTLSQPASSPLPLSGASFSMLLVNLG
PEHLLALLHAALMENKILIHSLRPAIQTSVAEALVSVIFPFHWQCPYVPLCPLALATVLN
APFPFIVGVDSRYFELYDPPLDIVSVDLDTNTIFQNEEKKGTSWKALPKKPCKILQAGLT
RLYQELQMQQQRKDDSLTDVAGVRCRSAHTLEVEIQEAFLRFMASILKGYRSYLRPITQA
PSEKATDASSLFDLQGFLKSRDRSYHKFYTQLTKTQMFIRFIEECSFAGDKNASLAFFDD
CVEKVDVEHGEETRLVELDESLRGEHTVLVMPPEPPPAPSGPNSEPLASYSYDGFPALQP
ELLEKPNGGAAYPPSQATPRVVGVPGSPALVTRRTQQEIKLAQKLARKFSAVPNLWAMCL
LGNCYSLWFICLPAYAKARHSKLRVLETAYSVLLRMQEHRLECPDEVCYRVLMQVCGQYG
RPVLAVKVLFEMKKAGIHPNAITYGYYNKALLESTWPGGNRGGYCLWVRLRNVVRAIACF
RQGIKHPRRRSFSSVCDEAGQDSSSHGSTESSGDIPPSGQLPANSKERPITYICDIAEVA
ELSTSVSHVAEDSVFVEPTAPGTDGHKHLGNGVKRDQKPSSTKNRTESLKLSRSYSDIED
KRAGSSRRENIHPSHELSRDGQDKELGGSGENWRGSSETVDSSDAEFSRRENTRHKRTSS
MPRPVLRTSVSVGCDPLSLLAAEQEDRSVDGRSRLPKAMRRLTEDLHDLQLSAGKSGSDG
KVSAHSRARRGLFRRLSMPYLSHQTPSSPETQAAVARSRTLHALPPSMEGSRGRLQSMPC
SATGSAGASSLPGTPQWGTARLDALKQAASGMAGVASKLYNRIGILGTPTKDDGKEADSA
ERRSVTDSDAAEDEEEVRDQASRSNIPQIVSNGLGQSCSSLASMASTDGGRAPSSIGSFP
STRNIPVLTVDRAEPGSPHYASSCSISQRPDVEVRISSCSQCHTCEGLVYDEQIMAGWTA
DDSNLNTACPFCNSTFVPCLSIEISDRRSCGNSSEWELEQAGSAGPPRGNELMPPVTPTL
TRSASTNTPLTEGKPETAGGAAPGLTHTHAVPTGSLPNIFHRRTADSSSEEGLTGATAAA
DATGPLSVPYLSPMVLRKELERLMEDEGDRTVCSVALLQQHPILFWNLLWYFQRLQLPSH
LPALLLLSRLGHSGTQTPQSGGPREGRRVLVHTLWDNRKLHQDLEQPLYVLWDTLVSAEG
SPAPDVEPPAAPVPSPGPGSGNASPGKAGQNPGKLNLSRNDLERMEKHIKGNDVYSPICQ
LLDAWSHRNRNLRRHRSLYRELLFFSLVSMGAENVDINVFDQEYRREHERITTNGGRLLN
YDLPPSAAASSCRQAFGELRL
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggaacgattagatcagcgcacgtgcaggtacgatggcctttgttccagcatgctggaa
gaaaagggcccccgtgtggcggactactttgtgctggccggcctgacggacacgtcgcgg
cccctggaggaggagatgagccaatcggacgggggaccgcgcaccgcccggccgaaggct
cccatcacagatgtggccgtcatcgtgaagtcacacggcgaggaggtgccgcagggcttc
acgtgcatcgagagcacgccgctgggcctgcccgccgacctcaaccacggcagcctcaag
agtccacagatctacttgtgctaccggaggggcagggacaaacctccgctcaccgacctt
ggggtcctgtacgagtggaaagaccgactgaggccgggctgcgagcttgtcgagaccacc
ccgtacggacgctgcgccaacgtaaacaacagcagcgccgtgtcccagcgcatcctgctc
acgttccgtcgcgccactgaccagaacgcccagaacacgctggctgtcaccgacatatgc
gtcattgtggccaacaagggggagagtccaccacacaccttctgcaaggttgaccgcaac
ctgaactccggcatgtggggctcagatgtttacctctgttataagaagtctctggtgaag
tcaaatgccattgcttacaaagctgggctcatcagcaggtaccccgtcggagattatgag
tcgttccagctgccagagtctgttccgctcttctgccttccccttggtgccaccattgaa
tgctggcaggccaacaccaagtaccccatgcccatcttctccacgtttgtgctcactggc
tcctctgctgagaaggtctacggcgccgccatccagttcttcgaagcgtacccaggcgag
cgcctgacagatcgccagaaaacgcagctcgggatgctgagcgccgtggaccacaagccc
attgctggcaaggtggcacacgccagcaagagcatctgcctgctatcgcactggcccttc
tttgaagcgtttcacaagttcctgctcttcctgtatcgcctctccgtgtctggacccaac
ctcatccccattgagaaacacatttcccacttcatgcataacacgccgtttccgtcgccc
cagagacctcgcatcttagtgcagctctctccacacgattctctcactctctctcagcct
gcatcctctcctctgcctctcagtggagccagcttctccatgctgctcgtgaacctgggt
cccgagcacctgctcgccctcctgcacgcagcgctcatggagaacaagatcctcatccac
tcgttgcgcccagccatccagaccagcgtggccgaggccctcgtgtcggttatcttcccg
ttccactggcagtgcccgtacgtcccgctgtgcccgcttgcgctggccaccgtgctgaac
gcgccgttccccttcatcgtgggggtcgactcgcgctacttcgagctgtacgaccccccg
ctggacatcgtcagcgttgacctcgacaccaacaccatattccagaatgaggagaagaag
ggcacaagctggaaggccttgccaaagaagccctgtaagatcctgcaggccgggctgact
cgtctctaccaggagctacagatgcagcaacagcggaaggatgactcgctgacggacgtg
gcgggcgtgcgctgccggagtgcacacaccctggaggtggagatccaggaggcgttcctg
cgcttcatggcctccatcctcaagggctaccgctcttacctgcgccccatcacgcaggcg
ccctccgagaaggccacggacgcgagctcgctctttgacctgcaagggtttctaaagagc
cgtgaccggtcctatcacaagttttacactcagctgaccaaaacgcaaatgttcatccgc
ttcatcgaggaatgctcctttgctggtgataagaatgccagccttgcattctttgacgac
tgcgttgaaaaggtcgacgtggagcacggcgaggagacgcggctcgtcgagctagacgag
tcgctgcgcggcgagcacacggtgctcgtcatgccgcccgagccgcccccggccccgtcg
ggccccaattcggagccgctcgcctcctacagctacgacggtttccccgcgcttcagccc
gagctgctggagaagcccaacgggggcgctgcgtacccgccgagccaggcgactcccagg
gtcgttggggtccccggcagtcccgcactcgtcacgcgcaggactcagcaggagatcaag
cttgcgcagaagctcgctcgcaagttctcggcggtgcccaacctgtgggcaatgtgcctc
ttgggcaactgctacagcctgtggttcatctgcctgccggcatacgcgaaggcgcgccac
tccaagctgcgcgtgctggagacggcctactccgtgctgctgcgcatgcaggagcaccgc
ctcgagtgccccgacgaggtttgctaccgggtgctgatgcaggtgtgtggacagtacggg
cgacctgtccttgctgtgaaggtgctgtttgaaatgaagaaggccgggattcatccgaat
gccataacctatggttactacaacaaggccttgttggagagcacgtggccaggcggcaac
cgcggagggtactgcctctgggtccgcctccggaacgttgtgcgcgccatcgcgtgcttc
cgccagggcatcaagcaccctcgccgacggtccttctccagcgtctgtgacgaagccggg
caggacagcagcagccacgggagtacggagagttctggtgacatccctccatctggacaa
ctgccggccaactcgaaggagaggcccatcacatacatctgtgacatcgctgaagttgca
gagctgtcaacatctgtcagccatgtggcagaagattctgtgtttgtggagcccacagct
ccgggcacggacggacacaaacaccttggcaatggagtgaaacgagatcaaaaacccagc
tccaccaagaaccggacagaaagcctaaaactcagccgctcttattctgacattgaggac
aagcgagcgggaagcagtcgccgtgaaaatattcacccttcccatgagctttccagagac
ggccaagacaaagaactcggtggcagtggagaaaattggcgcggaagttcagaaactgtg
gacagttccgatgcagagttttcccggcgtgagaacacgagacacaagcgtacgagttca
atgccccggcccgtcctacggacgagcgtctctgtgggctgtgaccccctctcgctgctt
gcggccgaacaggaggacaggtctgttgatgggcgctcacggctgcctaaggccatgcgg
aggctcacggaggacctgcacgaccttcagctgtcggctgggaaaagtggcagtgatggc
aaggtgtcggcacactcgcgcgctcgccgcggcctctttcggcggctcagcatgccgtac
ctctcccaccagaccccgagctccccggaaacgcaggcggcggtggctcgctcgcgcacg
ctgcacgcgctgcctcccagcatggaagggtcgcgaggacgtctgcagtctatgccctgc
tcggcgacgggcagcgccggagcgagctccctgcccggcacgccgcagtggggcacagcg
cgcttggacgccctcaaacaggcggccagtgggatggccggagtggccagcaagctgtac
aataggatcgggatactgggcacaccgaccaaggacgacggaaaggaagcagacagcgca
gagcggcgctccgtgactgactcggatgcagcagaggatgaggaggaggtgcgcgaccag
gcatccaggtccaacattccgcagatcgtctccaatggactgggccagagctgcagcagc
ctggccagcatggccagcacggacggaggcagggctccctccagcatcgggagtttcccg
tcgaccagaaatataccggtcctgactgtggacagggcagagcctgggtcccctcactat
gccagcagctgcagcatcagccagaggcccgacgttgaggtgcgcatctccagctgctcg
cagtgccacacgtgcgaggggctggtgtacgacgagcagatcatggccggatggacagcc
gacgactccaacctgaacacggcctgtcccttctgcaactccaccttcgtgccgtgtctc
agcatagagatcagcgaccgcaggagctgcgggaacagcagcgagtgggagctggaacaa
gcgggcagtgccggaccgccacgcggcaacgagctcatgccgcccgtcactcccacgctc
acccgcagcgccagcaccaacactccgctcaccgagggcaagccggagacggcgggcggc
gccgcccctgggctcacgcacacccacgccgtccccactggcagcctgcccaatatcttc
cacagacgaacggccgacagctcgagtgaagagggcctcacgggagcgactgcagcagcg
gacgcgacagggcccctgtcggtgccatacctctccccgatggttctgcgcaaggagctg
gaacgtctgatggaggatgagggcgatcgcacggtgtgctctgtcgcgttgctgcagcag
caccccatcctcttctggaacctgctgtggtacttccagcgcctgcagctgcccagccac
ctgcctgcgctgctgctgctgtcacggctcggccactcgggcacacagactccgcagagt
gggggtccgcgggagggaaggcgcgtgctggtgcacacgctctgggacaaccgcaagctg
caccaggacctggaacaaccgctctatgtcctgtgggacaccctcgtgtctgcggaaggt
tcgccagccccagacgtggagccccccgcggcccctgttcccagccccggccctggctcg
ggcaacgcctcgcccggcaaggcgggccaaaaccccggcaagctgaacctgagccgcaat
gacctggagcgcatggagaagcacatcaagggcaacgacgtctacagccccatctgccag
ctgctggatgcctggagccatcgcaaccgcaaccttcgcagacacaggagcctatatcga
gagctgctgttcttctcactggtgtccatgggagctgagaatgttgacataaatgtcttc
gatcaggagtaccgacgggaacacgagcgcatcacgaccaacggagggcggctgctgaac
tacgacctcccgcccagcgccgcagcttcctcgtgccgccaggcatttggggaactgcga
ctctag
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integrated database retrieval system
