Petromyzon marinus (sea lamprey): 116956744
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Entry
116956744 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04382
Cornified envelope formation
pmrn04510
Focal adhesion
pmrn04512
ECM-receptor interaction
pmrn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116956744
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116956744
09142 Cell motility
04820 Cytoskeleton in muscle cells
116956744
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116956744
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmrn04147
]
116956744
00536 Glycosaminoglycan binding proteins [BR:
pmrn00536
]
116956744
Exosome [BR:
pmrn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116956744
Glycosaminoglycan binding proteins [BR:
pmrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116956744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116956744
NCBI-ProteinID:
XP_032834410
UniProt:
A0AAJ7XHD8
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All DBs
Position
67:2072773..2216909
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AA seq
1432 aa
AA seq
DB search
MGEVVDEVVLDEVVDEGEKGEPAIPGSRGPPGFPGAPGFGSKGEAGQPGLPGREGSPGKD
GERGTPGRDGSPGSSGQPGLTGGPGPQGPKGDRGFPGPPGNVGVGIATLKGDRGLPGTPG
RPGSTGQPGPPGFPGQPGLPGYAGQTQAGPPGLPGERGSKGDTGVPGLGIPGPSGRPGTP
GPQGPVGQPGDSGPCDRGIPGRPGDTGQPGRPGQPGIRGDKGDTCVNCQSPFPPSVPSTQ
GPPGPPGAPGQPGFPGTPGFKGDVGTPGTSGPRGPPGIPGPVGRLGAPGLKGDPGSAFPV
PGTKGDEGDPGRPGIDGRPGNPGRPGVDGSPGFPGSKGDPAPFGLKGEQGPPGPPGFSSS
PGLQGPPGPPGIGFPGPPGMKGPQGVPGRPGAPGTPGEKGDPGLTKTEPGPSGPAGPPGG
QGPPGFPGTPGFEGSPGTPGQPGPKGDQGLPGRGVPGGPGPKGFSGTPGTPGNPGGPGTP
GQGGNPGSPGFPGIKGDPGFGTPGPSGTPGPRGVPGPPGLKGDPGLPGQGAQPGRPGADG
TPGPKGDAGFQGRPGQPGSPGTPGRGSPGATGTPGPSGPPGTPGFPGGPGAKGERGPPGL
GGQGSPGDRGTPGPPGPQGQPGQPGSGGRSGQDGQPGRPGGKGDMGVMGLPGPSGPSGLP
GTPGSPGPPGFDGRPGDPGIPGYAGGPGEKGDRGFPGQPGVRPNVTDLRGPKGDRGSPGR
DGGPGPPGFSGSPGNPGSPGSQGLPGPSGSPGVKGERGFPGQPGSPGQSGEKGDSGELGI
PGPPGSIGVPGAAGSPGSPGSPGFAGSKGAKGEPSPPGLGFPGRAGEKGDPGFPGSPGTG
TRGLPGSPGQPGSPGFTGAKGEKGSDGRPGGPGSSGPKGAAGFPGRDGQPGSPGLIGPPG
QPGSPGFPGSKGTQGRDGIPGSPGSKGDPGPYDAGLPGPPGSPGFQGSPGLPGSPGSSGQ
PGFPGSKGDPGRQGGPGPPGRQGPAGPPGEIYPGIKGDPGLPGLPGNPGPPGSQGPVGLP
GFTGPQGEVGPPGPSGASGYPGPKGSPGIAGIPGSPGLPGFDGPKGERGPPGISGFIGAK
GSPGSPGQKGNVGPTGPSGPSGLPGRAGAPGSAVGGVPGPGGPPGPVGPPGVSGLPGSPG
PLGVPGVSGDPGEDGNPGFDGFPGEKGDPGSSGGPRPARIPREQGGRGIPRTPGYPWSHH
GIHAADAARFMISRHSQSTELPTCPQGTTLIYTGYSLLYLQGNERAYGQDLGTLGSCLPR
FSTMPFMFCDVSAVCNFASRNDYSYWLSTSQPMPASMAPVSGPQIQPFISRCAACEAPGL
VIAVHSQSVRLPSCPGGWDTLWIGYSFVMHVSAGAEGSGQPLSSPGSCLEEFRPAPFVEC
HGRGTCNYYTNSYSYWLADIDARHMFRIPQPETLKAGVLETKVSRCVVCMKR
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggtggtcgacgaggtggtgctggatgaggtggtggacgagggggagaaaggg
gagccggcaattccaggatcaagaggacctcctggatttcctggcgccccagggtttggg
agcaagggagaagccgggcagcccggcctgcctggcagagagggctctccagggaaagac
ggtgaacgaggaacaccaggaagagacggatctccaggctcctcgggccagcccgggctt
acaggtggacctgggcctcagggtcccaagggagatcggggatttccaggccctcctgga
aatgtgggtgttggaatagcgactttgaaaggtgatcggggcctacccggtacgccggga
cgtcccggcagtacaggccaaccaggtccacctggctttcctggccaacccgggttaccc
ggctacgctgggcagacacaagcgggaccccccggcttgcccggggagaggggctccaag
ggggacaccggggtacccggcctggggatccccgggcccagcgggaggcccgggacccca
gggcctcaaggccccgtgggccaacctggagactcgggcccgtgcgaccgcggaatcccc
ggcaggcccggtgacaccggccagccgggacggcctgggcagccggggatcagaggtgat
aagggtgacacgtgtgtaaattgccagagcccattccctcccagcgtcccctctacacag
gggcccccagggccgcctggagcccctgggcaaccaggtttccccggaactccgggcttc
aagggcgacgtgggaaccccaggcacctctgggccaaggggtccccccggtatccccggc
cccgtggggcgtctgggtgccccggggctcaaaggggacccaggatctgcgttccccgtg
ccgggtaccaagggcgacgaaggggaccctgggaggccggggatcgacggacggcccggg
aaccccgggaggcctggggtggatgggtcccccgggttcccggggtctaaaggggaccct
gccccgtttggactgaaaggggagcagggtccaccgggccccccgggattttcgtcatcg
ccggggctacagggccccccgggacccccagggatagggttccctggcccccccggcatg
aaggggccgcagggggtcccgggccggccgggtgccccagggactcccggcgagaaggga
gaccccggcttaaccaagactgagcctgggccctcagggcctgcaggaccccctggggga
caaggacccccggggttcccagggaccccgggattcgaagggagtccagggaccccgggg
cagccggggcccaaaggggatcagggactccctggcaggggggtccctggaggacctgga
cccaaaggcttctcgggtaccccgggaactcccggaaaccccggggggcccggcacgccg
ggacagggtggcaatccgggcagccccggattccccggcatcaagggagaccccggcttt
ggcaccccgggaccatcgggaaccccagggccccgtggggtccccgggcccccgggcctg
aagggggaccccgggctaccgggacagggggcccaacccgggcgacccggggcggatgga
acgccggggcccaagggcgatgcagggttccaggggaggcccggtcaaccggggtcacct
ggtacccctggcaggggctctcctggagcaacggggaccccaggaccatcgggtccaccc
gggaccccaggtttcccggggggccctggcgccaagggggagcgaggccccccaggactg
gggggccaggggtccccgggggaccggggaacgccgggaccccccgggccccaggggcag
ccgggtcagccgggcagcggagggaggtcggggcaggatggacaaccagggaggcccgga
ggtaaaggtgacatgggggtcatgggcctaccagggccctcgggtcccagcggcctcccg
gggaccccagggtcacccggtcccccaggttttgacggacgcccaggtgacccagggatc
cctggttacgccgggggacccggagagaaaggggaccgtgggtttccaggtcaaccgggg
gtcaggcccaacgtcaccgacctaaggggacccaagggggacagagggtccccaggacgg
gatgggggcccaggtcccccaggattttcggggtctcctgggaaccccggatccccaggg
tcccagggactccccgggccgtcaggatccccaggtgtgaagggtgagagggggttcccg
ggtcagcctggcagccccgggcaatccggagagaagggggattcgggagagcttgggata
ccaggaccccctggcagtatcggcgtccctggggctgcggggtccccggggtcgcccggg
tcccccgggttcgcagggtccaagggggccaagggggagccctctccacccggactggga
ttccccggcagggcaggagagaagggcgacccaggattcccagggtcaccagggaccggg
actcggggcttgccggggtcaccgggtcagccggggtcaccgggatttaccggcgccaag
ggggagaaggggtcagatggacggccaggaggcccagggtcctcaggacccaagggagct
gccggattccctgggagagacggacaaccaggatctccaggactcattggacctccgggt
cagccggggtcgcccggatttcctggaagcaaaggaactcaaggccgtgatgggatcccc
ggttcccccggtagcaaaggggacccagggccctacgatgccggtctgccagggcctcct
ggatcacctggatttcaagggtctcctggtctccccgggtctcccggatcgtcgggccaa
cccggcttcccggggtcaaagggcgaccccggacgtcaggggggtccaggccccccggga
cgccagggcccagcggggccccccggggagatctacccgggcatcaagggggaccccggt
ctgccgggactccctgggaatccagggccccccggctcgcagggtcccgtgggcctcccc
ggcttcacgggaccccagggggaggtcggtccgcctggtcccagcggcgcctccggctat
ccgggccccaaggggtcacccgggatcgcggggattccgggttcccctgggcttcccggg
tttgacggccccaagggtgaacgaggaccccccgggatttccggcttcattggtgctaag
ggctcccctggcagccccgggcagaaggggaacgtgggtcccaccggcccttctgggcct
tctggcctcccaggccgtgcaggggcacctggcagcgctgtcggcggtgtgccgggccct
ggcggacccccaggacctgtgggaccccctggggttagcggattgccgggatcaccgggg
ccactgggtgttccgggcgtctccggcgaccctggggaggatggcaacccgggatttgac
ggcttccccggagagaaaggggacccggggtcatcgggggggcccaggcccgcacggata
ccccgggagcaagggggacgtgggattccccggacccccgggtacccctggagtcatcac
gggatccatgcggcggacgcggcacggttcatgatttcacgtcactcgcagagcacggag
ctcccgacatgcccccagggaacgacgctgatctacaccggctactcgctcctttacttg
cagggaaatgaacgcgcgtacggacaggacctgggcacgctgggcagctgcctgccccgc
ttcagcaccatgccgttcatgttctgcgacgtgagcgccgtctgcaacttcgcttcgcgg
aacgactactcctactggctgtccaccagccagcccatgccagccagcatggcgcccgtg
tcggggcctcagatacagcccttcatcagcaggtgtgcggcgtgcgaggctcctgggctc
gtcatcgccgtgcacagtcagtcggtgcgcctgcccagctgccccgggggctgggacacg
ctgtggatcggatactcgttcgtcatgcacgtgagcgcgggtgccgagggctccgggcag
ccgctgtcgtccccgggctcgtgcctggaggagttccgccccgcgccctttgtcgagtgc
cacggccgcggcacgtgcaactactacaccaactcctactcctattggctcgccgacatc
gacgcgcgccacatgttccggattcctcagccggagacgctcaaggccggagtgttggag
accaaagttagccgctgcgtggtctgcatgaagcgatag
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