Petromyzon marinus (sea lamprey): 116957033
Help
Entry
116957033 CDS
T09614
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116957033 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116957033 (DHX38)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116957033 (DHX38)
Spliceosome [BR:
pmrn03041
]
Complex C
Other components
Step II factors
116957033 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
Motif
Other DBs
NCBI-GeneID:
116957033
NCBI-ProteinID:
XP_032834841
UniProt:
A0AAJ7UGK1
LinkDB
All DBs
Position
69:complement(836920..906086)
Genome browser
AA seq
1091 aa
AA seq
DB search
MEEDDDEVVVEASLHRLEGSSGSLPGGLVIRKKSAATEPHVFKVPAPRCSLLGLDRLAAL
KRQQREEEEEEEREEEEEERSGRLIMEARGEGRGEHGGGGDGAGGGGGGGGGGGAARRAE
RTYRGVRVETPSHTGGVSSEFRERRRQRDRRRQHGVKAATATSSTSSTSSTSSTSSAAAA
STSSSRAGSSGERYRDRGERGGERGGERGSERGGERGGERGSERGGERGGERGSERGSER
GKWSERSRRSETREEPLTPRQRPKGSLTPSGAGWDEEEDGGGGGGGGGGGGGGGGGGGGG
GGGGGRLRRSQWDSPSPAPSQHLRSSPSSPSSPSSPRHGDRSCRSRAVADESPLGTPSYK
YNAWASNRLHLGATPRLRSATHDGGRVSQRGEGGVGGIVFDNEADRAQWEEDQKQADREW
YTLDEGYDDSRNPLAGASSAYVQRREQHAQTQRQKRVSAQRRQINEVTGRVGYAIRFEDV
TSERTVIKYMTDGILLRESLREADLDRYSAVIMDEAHERSLNTDVLFGLLREVVARRVDL
KLIVTSATMDAGKFAAFFGNVPVFHIPGRTFPVDIFFSKAVVEDYVEGAVKQALQIHLSP
SPGDILIFMPGQEDIEVTCDQIVERLAELENGPPLAVLPIYSQLPSDLQAKIFQKAPGGV
RKCIVATNIAETSLTVDGIMYVVDAAYCKLKVFNPRVGMDTLQIYPISQANANQRAGRAG
RTGPGQCFRLYTQSSYKNEMLTTTVPEIQRTNLANVVLLLKSLNVQELLQFHFMDPPPED
NMLNSMYQLWILGALDNTGALTPTGRMMVEFPLDPALSKVLIVACDTSCSAEVLSIVSML
SVPSIFYRPKGREEESDQAREKFAVPESDHLTYLNVFLQWKRAAYTTSWCNEHFVHAKAM
RKVREVRAQLKDIMVQQRMGLASCGSDWDVVRKCICSAYFHQAAKLKGIGEYVNIRTGMP
CHLHPTSALFGMGFTPDYIVYHELIMTTKEYMQCVTAVEGEWLAELGPMFYSVKHAGKSR
QENRKRAKQELTAMEAEMVEAQEELKVRQQETGRRAVPASPRALICTPGRRQPGTPAGGS
TPRRTPARFGL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggatgatgatgaggtggtggtggaggcgtctctgcaccgcctggaagggtcg
agcggctctctcccgggggggttggtgatccgcaagaagagcgctgctacagagccccac
gtcttcaaggtaccggcaccgcgatgcagcctcttgggcctcgaccggctcgccgctctg
aagcgtcagcagcgcgaggaggaggaggaggaggagagggaggaggaggaggaggagcgg
agtgggagactcatcatggaagcacgcggggaggggagaggggaacatggcggtggtggt
gacggcgccggtggtggcggtggtggcggtggtggtggcggtgccgctcgtcgagcagag
aggacgtaccgcggtgtgcgtgtggagacgccgtctcacaccggcggcgtcagctccgag
ttccgcgagaggcgtcgccagcgggaccggcggcgccagcacggggtgaaggcggccacg
gccacctcgtccacctcgtccacctcgtccacctcgtccacctcgtcagcggcagcggcg
tcgacctcgtcaagtcgagcagggtcatctggcgagcgttaccgagatcgtggtgagcgt
ggtggtgagcgtggtggtgagcgtgggagtgagcgtggtggtgagcgtggtggtgagcgt
gggagtgagcgtggtggtgagcggggtggtgagcgtgggagtgagcgtgggagtgagcgt
gggaagtggtcggaacgcagccgtcgctcggagactcgggaggaaccactcacccctcgg
cagagaccgaaaggctccctgacaccgtccggagctggctgggacgaggaggaggatggt
ggtggtggtggtggtggtggcggtggtggtggtggtggtggcggtggtggcggtggtggt
ggtggtggtggtggccgtctccgccgctcccagtgggactcaccctcaccagctccatcg
cagcacctccgctcctcaccctcctcaccctcctcaccctcctcaccacggcatggcgac
aggagttgcaggtcgcgggccgttgcagatgagagtcccctgggcacgccgtcctacaaa
tacaatgcctgggcctccaacaggctgcacctgggggccacacctcgcttgcggagcgcc
acacacgatggtgggcgggtgtctcagcgtggcgagggcggtgtgggtggcatcgtgttc
gacaacgaagcggaccgggcacagtgggaggaggatcagaagcaagcggaccgggagtgg
tacacgctggacgagggctatgacgattcccgcaacccgctggcaggagcctcaagcgct
tatgtccagcggcgtgagcagcacgcccagacccagcggcagaaacgcgtgtcggcacag
cggcggcagatcaacgaggtgacggggagggtgggctacgcgatccgctttgaggacgtg
acgtcggagcgcaccgtcatcaagtacatgacggacggcatcttgctgcgcgagagtctc
cgtgaggccgacctggaccgctacagcgccgtcatcatggacgaggcccacgagcgctcg
ctcaacacggacgtgctcttcggcctactgcgggaggttgtggctcgccgcgtcgacctc
aagctgatcgtcacctcggccacgatggatgcgggaaagtttgcggcgttcttcggcaat
gtgcccgtgttccacatccccggtcgaaccttccccgttgacatcttcttcagcaaggcc
gtggtggaggactacgtggagggtgcggtgaagcaggcgctacagatccatctctctccg
tctccgggtgacatactcatcttcatgccgggacaggaagacattgaggtgacgtgcgac
cagattgtggagcgcctggcggagctggagaatggccccccactcgctgtgctccccatt
tactctcagctgccctcggacctgcaggccaagatcttccagaaggctccaggcggggtg
cgcaagtgcatcgtggccacaaacattgcggagacgtcgctcaccgtggacggcatcatg
tacgtggtggacgctgcctactgcaagctcaaggtcttcaacccgcgtgtgggcatggac
acgctgcagatataccccatcagccaggccaacgccaaccaacgtgccgggcgagcgggc
cgcaccgggcccggacagtgcttccgcctgtacacccagagctcgtacaagaacgagatg
ctcaccacgacagtgcccgagatccagcgcacgaacctggccaacgtggtgctgctcctc
aagtcgctcaacgtgcaggagctgctgcagttccacttcatggaccccccgccggaggac
aacatgctgaactccatgtaccagctgtggatactcggggcactagataacacaggtgca
ctgacccccacgggccgcatgatggtggagttcccgctggacccggccctctccaaggtg
ctcatcgtggcctgcgacacctcctgcagcgccgaggtgctgtccattgtgtccatgctc
tccgtgccgtccatcttctaccgtcccaagggccgcgaggaggagagtgaccaggcgcgt
gagaagtttgcggtgccggagagcgaccacctcacctacctcaacgtcttcctgcagtgg
aagcgagccgcctacaccaccagctggtgcaacgagcactttgtgcacgccaaggccatg
cgcaaggtgcgtgaggtgcgtgcacagctcaaggacatcatggtgcagcagcgcatgggc
ctggcctcgtgcggctccgactgggacgtggtgcgcaagtgtatctgttcggcctacttc
caccaggctgccaagcttaagggcattggtgagtacgtgaacatccgcacaggaatgccg
tgccaccttcacccgacctcggccctcttcggcatgggattcactccggactacattgtg
taccacgagctcatcatgaccaccaaagagtacatgcagtgtgtgacggcggtggaggga
gagtggctggcggagttggggcctatgttctacagcgtcaagcacgcgggcaaatcacgt
caggagaaccgcaagcgtgccaagcaggagctcaccgccatggaggcggagatggtcgag
gcgcaggaggagctgaaggtccgtcagcaggagacggggcgccgtgccgtcccggcctcc
cccagggctctcatctgcacgccgggccggcggcagccggggacgccggccgggggctcg
acgccgaggcgcacgccggcacgcttcgggctgtga
DBGET
integrated database retrieval system
