Petromyzon marinus (sea lamprey): 116957545
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Entry
116957545 CDS
T09614
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04140
Autophagy - animal
pmrn04148
Efferocytosis
pmrn05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116957545 (VPS11)
04148 Efferocytosis
116957545 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116957545 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmrn04131
]
116957545 (VPS11)
Membrane trafficking [BR:
pmrn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116957545 (VPS11)
Hops complex
116957545 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
TPR_Vps41
zf-C3HC4_2
zf-RING_2
zf-rbx1
zf-C3H2C3
zf-C3HC4
Beta-prop_EML_2
TPR_GEMI5
zf-RING_5
TPR_11
zf-RING_UBOX
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
116957545
NCBI-ProteinID:
XP_032835672
UniProt:
A0AAJ7XIR8
LinkDB
All DBs
Position
3:complement(23736707..23749594)
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AA seq
934 aa
AA seq
DB search
MAFLQWRRFAFFDKEAARDPAGGAGAFDGLAALNVSVCACGRGQMLFGDFEGNIHFLNRS
LQLSSFKAYELRVSHLYQLKQHNLFVSVGEDEQGINPMVKVWNMDKRDKTGIPLCCRIFR
AIPSNKPTEVTCLAIHEGLNYMGIGFTDGSVVLIKGDITRDRHSKTQVVHESTYPITGLA
FRQVGKVMHLFVVTTDNVQSYVLQAKIERHLLDPHGCALRCSTLSDLSQDNQFIVARDDC
VYLYQPEERGPCFAFEGEKRLVCWFRGYLVIVSKDSKSMPRASGSGLDRQAMDMHMVTVY
DLENKLIAYSAPFPHVVDVLVEWGSLFVLTGDNKLVALHEKDTQTKLEMLFKKNLYVLAI
SVAKTQHLDTDGLAEIFRQYGDHLYSKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIH
NLTAYLQALHRQSRANKDHTTLLLNCYTKLKDSSKLEEFIKTSEVAFDVETAIKVLRQAG
YYDHALYLAEKDGQHEWYLKIQLEDIKDCHKALVYIAKLPFEQAESNLKKYGKTLVQYAP
VETTGLLKVLCTGYRPRADPHGGDGDASAFAAEAEKANPEEFIHIYANNREQLKAFLEHM
AEVQPRCSQGVNDTLLELYLCDWMHETDPQKKKNLENATMALLTSGAFNSNFDKALIMCQ
MNNFKDGILFLYEKAQLYQQIVRFHMESDDYQRVIEACKRYSDRESCLWEQALGYFARKE
ENCRPFITEVLQHIDQNNLMPPLLVVQTLAHNSTATLAVIKDYIIRRLQSECEQIAEDEQ
YVRGYREETEKIRGHIEELRTSAKIFQVTKCSVCKHPLELPSVHFLCEHAYHQHCFEGYA
ESDAECPACLPENRKLQERIRAQEHSRDLHETFHHELQHSSDGFAVVAKYFGRGVFNKIT
LVTDSTAGGRRVPVGGDPVLQRELLLMPQTGRML
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcctgcagtggcggcgcttcgccttcttcgacaaagaggcggcgcgggacccc
gcgggaggcgccggggccttcgacggcctcgcggcgctcaacgtcagcgtgtgcgcctgc
ggccgcgggcagatgctgttcggggatttcgaagggaacattcacttcctcaatcggagt
ctgcagctgagcagcttcaaggcgtacgaactgcgggtgtcgcacctgtaccagctgaag
caacacaacctgttcgtgtcggtgggggaagacgagcaaggaatcaaccccatggtaaaa
gtgtggaatatggacaaacgtgacaagacgggcatcccactgtgttgccgcatcttcaga
gccatccccagcaacaagccgaccgaagtgacttgcctcgccatccacgagggcctcaac
tacatgggcataggattcacggacggcagcgtggtacttatcaagggagatatcacacgt
gaccgccacagcaagacacaggtggtgcatgagagcacgtaccccatcacgggcctggcc
ttccgccaggtgggcaaggtgatgcacctcttcgtggtgaccaccgacaacgtgcagtca
tacgtactccaggcaaagattgagcggcacttgctggacccccacggatgtgccctgcgc
tgctccacgctcagcgacctctcgcaggacaatcagttcatcgtggcgcgtgacgactgc
gtgtacctgtaccagcccgaggagcgtgggccctgcttcgccttcgagggagagaaacgc
ctcgtgtgctggttccgcggttacctggtcatcgtctccaaggattcgaagtccatgcct
agagcgtcagggagtggcttggaccggcaagcgatggacatgcacatggtgacggtgtac
gacttggagaacaagctgattgcctactcggcacccttccctcacgtggtggacgtgctg
gtggagtggggctccctctttgtgttaacgggcgacaacaagctggttgccctgcatgag
aaggacacgcagaccaagctggagatgctgtttaagaaaaatctgtacgtgctggctatc
agcgtggcaaagactcaacacctggacacggatggattagcagagatctttcggcagtat
ggggatcacctgtacagcaagggagatcacgatggagccatacagcagtacataaggacc
attggcaagttggagccgtcatatgtcattcgcaagttcttagacgctcagcgaatccac
aacttaacggcatacctacaggccctgcatcgccaatcccgagcaaacaaggaccacacc
acgttgttgctcaactgctataccaagctcaaggacagctctaagctggaagagttcata
aagacgagtgaagtggcgttcgacgtcgagacggccatcaaggtgctccgccaggcagga
tactatgaccatgcactctatctggctgagaaggacggacagcacgagtggtacctcaag
atccagctcgaagacatcaaggactgccacaaagctctggtgtacattgccaagctgccg
tttgagcaggccgagagcaacttgaagaagtacggcaagacattggtgcagtacgcccca
gtggagacgacagggctgctcaaagtgctgtgcacggggtaccggccgcgagccgatccc
cacggcggcgacggggatgcctctgccttcgcggcagaagccgaaaaggcaaacccggag
gaattcatccacatatatgccaataaccgggagcagctgaaagcatttttggagcacatg
gctgaggtgcagccacgatgttcgcagggtgtcaacgacaccttgctggagctttacctg
tgcgattggatgcacgagactgatccacagaaaaaaaagaacctggaaaatgccacaatg
gctctgctgacgagcggagcgttcaacagcaacttcgacaaggccctcattatgtgtcag
atgaacaacttcaaggatggcattctgttcctctacgagaaggcacagctatatcagcag
atagtgcggtttcacatggaaagcgatgactaccaacgtgtcatcgaagcgtgcaagcgc
tacagtgaccgtgagagctgcctgtgggagcaggccctgggatattttgcgcggaaggag
gaaaactgtcggccgttcatcacggaggtgctacagcacatcgaccaaaataacctcatg
ccgccccttcttgtggtgcagaccctggctcacaactcaacagccacactggcagtcatc
aaggactacatcatccggcggctacagtcagagtgcgagcagatagcggaggatgagcag
tacgtgcgtgggtatcgagaggaaacggagaagatccgtggccatattgaggagctgcgc
accagtgcgaaaatttttcaggtgacaaagtgcagcgtgtgcaagcatccgctggagctg
ccatctgtgcacttcttgtgcgagcacgcctaccaccagcactgcttcgagggctacgcc
gagagcgatgccgagtgccccgcctgcttgcccgaaaaccgcaagctacaggagcgcatt
cgcgctcaagagcattcacgggatctgcacgagaccttccaccacgagctgcagcattca
tcggatggcttcgctgtcgtggccaaatactttggtcgcggagtgttcaacaagatcacg
ctggtgacggacagcacggcagggggccggcgggtaccagtcgggggcgaccctgtgctg
cagagagagctcctactcatgccgcagacagggcgcatgctctga
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