KEGG   Petromyzon marinus (sea lamprey): 116957777
Entry
116957777         CDS       T09614                                 
Symbol
THOC6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116957777 (THOC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmrn03019]
    116957777 (THOC6)
   03041 Spliceosome [BR:pmrn03041]
    116957777 (THOC6)
Messenger RNA biogenesis [BR:pmrn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     116957777 (THOC6)
Spliceosome [BR:pmrn03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    116957777 (THOC6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_CDC20-Fz WDR55 WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IP5PC_F Beta-prop_SPT8 WDR54 Beta-prop_CAF1B_HIR1
Other DBs
NCBI-GeneID: 116957777
NCBI-ProteinID: XP_032836019
UniProt: A0AAJ7UGS8
LinkDB
Position
38
AA seq 332 aa
MAATAADIQHTLEMLHMTVFSQSFSPCGKYLAAGNSYGRVAVFSLSLALGLDATEESRKP
IYTFTAHESPVYSLVSTDRLLISAGNGLVKAWNWSDLIKKTAKEVWSKQPPYKMGVDVPE
INALLLNEKDNSLYLGCGDCNVYNMDLESGTCKLFLEGHTDYVHCLALRDHVSEVLSGGE
DGTVRHWDVRTGNLVQCVEIFKYQECARSEFGKWIGCLATDSDWMICGGGPALSLWHLRS
LTPTTVFPLNGSHHAAMFHQDLIISAGSGHSIDHCQVNGEVRARIPVSTPSVYSLQVNHN
SSENKVLSAAGSSHKLEVFTNLGYRAFCLAFT
NT seq 999 nt   +upstreamnt  +downstreamnt
atggctgccaccgcggccgacatccagcacacgctggagatgctgcatatgactgtgttc
tcacagagcttctcgccgtgtgggaaatacctggcggcgggaaacagctacggacgcgta
gcggtgttcagtcttagcttggcgcttggtttggatgccacggaggagagtcgaaaaccc
atatacaccttcacagcacatgagagtccagtgtacagccttgtttctacggatcggctg
ctcataagtgccggcaatggattggtgaaggcctggaactggagcgacttgattaagaag
accgcaaaggaggtgtggtcaaagcaaccgccttacaagatgggagtggacgtacctgag
atcaacgctcttctgctgaatgagaaggacaactcgctgtacctgggctgtggagactgc
aacgtgtacaacatggatctcgagtctggcacatgtaagcttttcctggagggccacaca
gactacgtgcactgtctggcgctcagagaccatgtgagcgaggtgctctcgggcggggaa
gacggcactgtaaggcactgggatgtcaggaccggaaacctcgtgcagtgtgtggaaatc
ttcaagtatcaggaatgtgcccggtctgagtttggaaagtggattggttgcttggctacg
gactccgattggatgatctgcggtgggggacccgcgctcagcctgtggcacctgcgctcg
ctcacccccaccacggtcttcccgctcaacggctctcaccatgcagccatgtttcaccag
gacctgatcatctcggctggttcgggccactccatcgaccactgccaggtgaacggggaa
gtccgcgcgcgcatcccggtctccaccccctctgtctactctctccaagtcaaccacaac
tcctccgaaaacaaggttctatctgctgctggtagcagccacaagctggaggtgtttacc
aaccttgggtaccgggccttctgcctcgccttcacctag

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