Petromyzon marinus (sea lamprey): 116958265
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Entry
116958265 CDS
T09614
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116958265 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116958265 (PRPF4)
Spliceosome [BR:
pmrn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116958265 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
PRP4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_SCAP
WD_LRWD1
eIF2A
Beta-prop_SPT8
WD40_like
NYD-SP28
Motif
Other DBs
NCBI-GeneID:
116958265
NCBI-ProteinID:
XP_032836687
UniProt:
A0AAJ7UKW1
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All DBs
Position
74
Genome browser
AA seq
503 aa
AA seq
DB search
MSREEGARSGRAHHSAAERTHERLARAPDAIKAAIEAGNINISSGESMPVEAGGGPGGVT
SRQAEMLAEFERRKRARLINVSTDDAEVKAALRKLTEPASLFGEGPAERRERLRNILSVV
GQDALKKSKREEEERAQKKKQELQETWYHEGPETLKEARIWLAKYSLPRAMQRLKEARAN
RELPEAARNAKRQELHRQIRSLSNFCSQIGDSRPISFCQFSPNSKMLATASWSGLCKLWS
VPDCTPIRTLRGHDQNVGAIVWHPQATLSLDPKDCNMASCSADGAVKLWNLVSDEPIANI
EGHTARVARIAYHPSGRFLGTTCYDHSWRLWDLQAQEEILHQEGHSREVYDIAFHPDGSL
AGTSGLDSFARVWDLRTGRCIMFMEGHLKEIFSIDFSPNGYHIATGSADNTCKIWDLRRR
ACVYTVPAHHNLVSRVRFQPTGGHFLVTAAYDNTAKVWSHPGWSPLTTLAGHEGRIMGLD
LSPDGSLIATSSYDRTFKLWMAE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagggaggagggagcgaggtcgggtcgcgcgcaccacagcgccgcagaacgcacg
cacgagcgtctggcacgagcccccgatgccatcaaagcggccatcgaggcgggcaacatc
aacatctccagcggggagtcgatgccggtggaggccggcggcggtcccggcggcgtgacg
tcgcgccaggccgagatgctggcggagtttgagcggcgcaagcgcgcgcggctcatcaac
gtgtccaccgacgacgccgaggtgaaggcggcgctgcgcaagctgacggagcccgcctcg
ctctttggggaggggcccgccgagcgcagagagaggctgcggaacatcctgtctgtcgtc
ggtcaagatgctctcaagaaatcgaaacgagaggaggaggagagagctcagaagaagaaa
caggagctgcaggagacttggtaccacgaggggcctgagactctcaaggaggcccgcatc
tggctcgccaaatactcgttaccacgggcgatgcagaggctgaaggaggcgagagccaat
cgggagctgccggaggcggcgaggaacgcaaagaggcaggagctccatcggcagattcgg
tcgctcagtaacttctgcagtcagatcggtgacagtcggcccatctccttctgccagttc
agccccaactccaagatgctggccacggcctcctggagtggactgtgcaagctatggtcc
gtcccagactgcaccccgatccgcactctgagaggccacgaccagaacgtgggggcgatc
gtgtggcacccgcaagccactctgagccttgaccccaaggactgcaacatggcttcctgc
agcgcagacggggccgtgaagctgtggaacctagtgagcgatgagcccatcgccaacatc
gaggggcacacggcgagggtggcgcggatcgcttatcacccgtcggggcgcttcctcggc
accacgtgctatgaccattcctggaggctgtgggacctacaggctcaggaggagatcctg
caccaggagggccacagcagggaggtgtacgacatcgccttccaccccgacgggtcgctc
gcagggacaagtggcctggactcgtttgctcgcgtgtgggacctgcgaactggccgctgc
atcatgttcatggagggtcacctcaaggagatattcagcatcgacttctctcccaacggg
taccacatcgcgacgggcagcgctgacaacacgtgcaagatctgggacctgcggcggcgc
gcgtgcgtgtacacggtgccggctcaccacaacctcgtgtcgcgcgtgcgcttccagccc
acgggtggccacttcctggtgacggccgcgtacgacaacacggcgaaggtctggtcccac
cccggctggtccccgctcaccacgctcgccggacacgagggccgcatcatgggccttgac
ctgtctcccgacgggagcctcatcgccacctcctcctacgaccgcaccttcaagctctgg
atggcggagtga
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integrated database retrieval system
