Petromyzon marinus (sea lamprey): 116958412
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Entry
116958412 CDS
T09614
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03040
Spliceosome
pmrn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116958412 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116958412 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116958412 (PRPF19)
04121 Ubiquitin system [BR:
pmrn04121
]
116958412 (PRPF19)
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116958412 (PRPF19)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116958412 (PRPF19)
Spliceosome [BR:
pmrn03041
]
Complex B
Other components
Prp19 complex
116958412 (PRPF19)
Complex C
Prp19-CDC5 complex
116958412 (PRPF19)
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
U-box type E3
116958412 (PRPF19)
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
116958412 (PRPF19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_HPS5
NBCH_WD40
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_DCAF12
PROPPIN
U-box
Tricorn_2nd
Beta-prop_ACSF4
Cytochrom_D1
Beta-prop_WDR35_TULP_N
ATG16
zf-Nse
PUMA_CC
Cep57_MT_bd
ISET-FN3_linker
Motif
Other DBs
NCBI-GeneID:
116958412
NCBI-ProteinID:
XP_032836882
UniProt:
A0AAJ7UL93
LinkDB
All DBs
Position
77:complement(1028..53186)
Genome browser
AA seq
516 aa
AA seq
DB search
MALICSISNEVPEHPCVSPVSGHVFERRLVERFVAENGVDPVSGTALSEEQLVDIRAPHT
ARPKPPSATSIPAILKSLQDEWDAVMLQSHSLRQQLQTARQELSHALYQHDAACRVIARL
TKEVAAAREALATLKPQAGLIVTPATPATQPVVAGTEAMDVSEQIGMGPEIIQKLQDKAT
VLTTERKKRGKVVPEELVRAEELGKYQPTASHVGLHSASVPGILAMDLCPTDTNRVLTGG
ADRSVVVFDKSSEQIVATLKGHSKKVTSVVFHPTQDVVLSASPDSTIRVWAVSASTSSTS
STSSTSSSSCSQLIRAHDGAVTGLSLHATGDYVLSSSDDQHWAFSDIHTGQVLTKVIDEN
MPSALTCAQFHPDGLIFGTGTVDSQIKIWDLKERTNVANFPGHSGAVSAISFSENGYYLA
TAADDSQVKLWDLRKLKNFKTISLEDSYQVRSLTFDQSGLYLAVGGTDIRVYLCKQWQEL
LHFTEHTGLVTGVRFGLHANFLASVGMDRSLRVYGP
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcatctgttcgatcagtaacgaggtgcccgagcacccgtgcgtgtctcccgtg
tcgggccacgtgtttgagcgccgcctggtggagcgctttgtggcggagaacggcgtggac
ccggtgagtggcactgcgctgagcgaggagcagctcgtggacatccgagccccacacacc
gcaaggcccaagcctccatcggccacctccattccagccatcctcaagtccctgcaggac
gagtgggacgcggtgatgctgcagagccactcgctgcgtcagcagctgcagacggcgcgt
caggagctgtcccacgcactgtaccagcatgacgcggcctgcagagtgatagcacgcctc
actaaagaagtagccgccgctcgtgaagctttggcaactctgaagccgcaggccggactg
atcgtgactccggctacaccggccacacagcctgtcgtggctggaactgaagcgatggac
gtcagtgaacagattggaatgggacctgaaatcatccagaagctgcaagacaaggcgacg
gtgctcaccacggagaggaagaagaggggcaaggtagtcccagaggagttggttcgtgct
gaggagctcgggaaatatcaacccactgcctctcacgtgggtctccacagtgccagtgtg
cccggcatcctcgccatggacctctgtcccaccgatacaaaccgcgtcctgacgggcggt
gcggaccgcagcgtggtggtgtttgacaagagctccgagcagatcgtggcgacgctgaag
gggcacagcaagaaagtcacctcggtggtgttccatcccacgcaggacgtggttctctcc
gcctcccccgactccaccatccgtgtatgggccgtctcagcgtccacctcctccacctcc
tccacctcctccacctcgtcctcctcctgctcacagctgatccgtgctcatgacggagcc
gtcaccggactgagcttgcacgccacgggcgactacgtgctgtcctccagtgacgaccag
cactgggccttctcggacatccacacgggccaagtgctcaccaaggtcatcgacgagaac
atgcctagtgcgttgacctgcgcgcagttccacccggacgggttgatcttcgggacgggt
accgtggattcccagatcaagatctgggatctcaaggagcgcaccaacgtggctaacttc
ccgggccactctggcgccgtgtcggccatctcgttctccgagaacggctactacctggcc
acggcggccgacgactcccaggtcaagctctgggacctgcgcaagctgaagaacttcaag
accatcagcctggaggactcctatcaggtgagatccctcacctttgaccagagcggcctc
tacctagccgtggggggcacggacatccgcgtctatctgtgcaagcagtggcaggagctg
ctacacttcaccgagcacacgggtctggtgacaggggtgaggtttggtctccacgccaac
ttcctcgcgtcggtggggatggaccgcagcctccgagtctacggcccctga
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integrated database retrieval system
