Petromyzon marinus (sea lamprey): 116958721
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Entry
116958721 CDS
T09614
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04115
p53 signaling pathway
pmrn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116958721
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
116958721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmrn04121
]
116958721
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116958721
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116958721
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116958721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
Beta-prop_WDR5
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR3_1st
WD40
zf-RING_5
zf-C3HC4_4
Beta-prop_THOC3
Beta-prop_DCAF4
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
RING_XB3-XBAT31
zf-rbx1
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Sina_RING
Beta-prop_EML_2
zf-RING_4
zf-Nse
Beta-prop_TEP1_C
zf-RING_10
WD40_like
RING_ZNF598
Beta-prop_WDR36-Utp21_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Prok-RING_4
RING-HC_RBR_RNF216
DUF3015
WDR55
Beta-prop_ACSF4
zf-RING_11
DUF1272
Motif
Other DBs
NCBI-GeneID:
116958721
NCBI-ProteinID:
XP_032837342
UniProt:
A0AAJ7UJB1
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Position
81:108472..144107
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AA seq
494 aa
AA seq
DB search
METSAMSTASVMGSGSSSSGSSSSCSSDRASGSSSGAAGRGSPRGGRRKRPAQAAIRDGL
VNSYEDKVKDFLCPICFDTMEEAYITKCGHSFCGKCIRRSLEETNRCPNCRYLIEHPTHI
FPNFLLNELILKQRQRLKEKRIKMEQPSGQQWHPIQELLALEQDGLELADVNRILELLTE
KKMRLEAESTVAQHQLLIEFLQQVQRGKQAQLDQLSKELSVLQGDMRHVEELMQKQHEAV
VPQVPQLPETPSTSGCLVDSDHPFPAFTDSARVKRLLCHGTDSMAARRRKLSAHFDGLER
CYSARRLSSPPDEDKRGELEEFQDCLAKFTRYSSVRPLATLSYTSDIYNGSSIVSRTLKI
GHRRAVSYAKFVSGEEIVSASIDGQLKLWSVNKPRCTRSFRGHVNERTFGGLATNGDYVA
CGSEDNSLYVYYKGLSEVSLTFKFDVAKGALGMESEGDGREFVSAVCWRLLPDGDSNVLV
AANNQGTIKVLELV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggagacctcggcgatgtcgacggcgtcggtgatggggtccggctcttcgtcgtccggc
tcttcgtcgtcctgctcttcggacagagcctcgggctcatctagcggggcggccgggaga
ggctcgcctcgaggcggccggcgcaagcggccggcgcaagcggccatccgtgacggcctc
gtgaactcgtacgaagacaaggtcaaagacttcttgtgccccatctgtttcgacacgatg
gaagaggcgtacatcaccaagtgtggccacagcttctgtggcaaatgcatccgtcggagt
ctggaggagacgaatcgttgcccaaattgcagatacctcattgagcatccaacccacata
tttcccaacttcctcttgaatgagctgatcctgaagcagcgtcagcggcttaaggagaag
agaattaagatggaacaaccgagcggccagcagtggcaccctatccaggagttgctggcg
ctggaacaagatggcctggagctcgccgacgtgaaccgcattctggagctgctcacggag
aagaagatgcggctggaagcggagtctacagtggcacaacaccagctgctgattgaattc
ctgcagcaggttcagcgcggcaagcaggcgcaactggatcagttgtcgaaggagctgagc
gtcctgcagggcgatatgcggcacgtcgaggagctgatgcagaaacagcacgaagccgtg
gtgccccaagtgccccagttgccagagaccccatcgaccagcggttgtctggtggactcg
gatcaccccttccctgcattcacggacagcgctcgggtgaagcggttgctgtgccacggg
actgactcaatggcggcaaggaggcggaaactgtcggcgcatttcgacggcctggagcgg
tgctactctgcccgccgcctgtcgtcgcccccggatgaggacaagcgcggagagctggag
gagttccaggactgcctggcgaagttcacgcgctacagctccgtgcgcccgctcgccacg
ctctcctacaccagcgacatctacaatggctccagcatcgtgtccaggactctgaagatt
ggccaccggagagccgtctcgtacgccaagttcgtgagcggcgaggagatcgtctctgcc
tcgatagacggccagctgaagctgtggagcgtgaacaagccccgctgcacgcgctccttc
agaggccacgtcaacgaaaggacctttggggggctggccaccaacggggactacgtcgct
tgcgggagtgaggacaactcgctgtacgtctactacaagggcctctccgaggtgtcgctc
acgttcaagttcgacgtggcgaagggcgcgctggggatggagagtgaaggggacgggaga
gagtttgtgagcgccgtgtgctggcggctgctgccggacggagactccaatgtacttgta
gcagccaacaatcaaggaaccatcaaggtgctggagctggtgtga
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