Petromyzon marinus (sea lamprey): 116958729
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Entry
116958729 CDS
T09614
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmrn03041
]
116958729
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116958729
Spliceosome [BR:
pmrn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116958729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Ank_2
Ank
Ank_5
DEAD
AAA_22
Ank_3
Ank_4
AAA_19
ATPase
nSTAND3
Helicase_C
AAA_16
Motif
Other DBs
NCBI-GeneID:
116958729
NCBI-ProteinID:
XP_032837348
UniProt:
A0AAJ7UMD5
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Position
81
Genome browser
AA seq
873 aa
AA seq
DB search
MQRLTVRKKETAEVAGAEMSFALSQRARHAARVLLQRFPDTGSDPGARREASRPSGRLND
GIAQVPPPRGRSELEAFRQTLPVAAFREQLLGTIAKSNILLVLGETGSGKTTQIPQYILD
EGSRLGSPCRVICAQPRRISAVAAAERVAEERGEGVGQTVGYQIRLESKVSPKTLLTFCT
NDVLLRTLMAGDSATSTVVTHIIVDEIHERDRFCDILLIKLRDILERQCNLRVVLMSAPL
NVSLFSEYFGGCPVVRLPGRLFEVKRFFLEDILPTTGYKSKEMERRQKEKDQLESQQNNL
SERYEEETGPSVPVRGASVALLTDQTKILNIEGGESAFEQEAERDGSKLEPWLVKEMDAC
ITNMWLHRDEDASTQLLHLLISERVSVDYRHSEKTATPLMVAAGRGLIDIVELLLRMGAD
VNLKDSNGMNTFDWAKKFHESDVVELLESSAASVGEPGPDQSKLANASTGLSPECRELLG
VYHHTLDDDDDKVDLDLILHLLNQICQSSSDGAVLIFLPGYDEIITLRDLILWDDKRFAG
QSHKYHVFTLHSNMQTCDQRRVLRSVPPGTRKIAANLLLRLRQKWRALFARRMREPSRAP
SQADEATVSAVVAALAREDEALGLRRPAGIGRRPTMPIAPAARFSPPAAAAAAASLRLSA
SERRFVAKSGNVRSLELSQQRAVWPTKLNGAFSRSCAVVHLVFSVRGSGRFQGYARTVSE
IGKERSETGGSPALGGAVSGAAAVPGAESPSGRCSTLLNPWCNNNNNKRVQVSRDGQELE
TRVGEQLLKLWDRWPCVAGDGGGGGGDGGGVVGASGTAGGADDDTAELIGSRATRTPAAD
GTPPLLEGCAKAAASHSPLQMPSVEGEEEAEAG
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcctcaccgtgcgcaagaaggagacagcggaggtggcgggcgccgagatgtca
tttgcgctgtcgcaacgggcgcgccacgccgcccgtgtgcttctgcagcgcttccccgac
actggctctgacccaggggcgagacgcgaggcgagcaggccgagcggacggctcaacgac
gggatcgctcaggtcccgccaccgcgggggcgatcggagctggaggcgttccgccagacc
ctccccgtggccgcgttccgggagcagttgctgggcaccatcgccaagtccaacatcctg
ctggtgctgggcgagaccggctccggcaaaaccacgcagatccctcagtacatcctggac
gagggcagccgcctggggtcgccgtgccgcgtgatttgcgcgcagccgcgccgaatctct
gccgtcgccgcggccgagagggtggcggaggagcgaggggagggcgtcggccagaccgtc
ggctaccagatccggttggagagcaaggtctcgccaaagacgctcctcacgttctgcacc
aacgacgtgctgctgaggaccctcatggccggagacagcgccacgtctaccgtcgtgacg
cacatcatcgtggacgagatccatgaacgcgaccgcttctgcgacatcctgctcatcaag
ctgcgcgacattctggagcggcagtgcaacctccgcgtcgtgctgatgagcgcccccctc
aacgtctcactcttttcagagtacttcggcggctgccccgtcgtcagactgcctgggagg
cttttcgaggtgaagcggttctttctggaggacatcctgcccaccactggttacaagtct
aaggagatggagagacgccagaaggagaaagatcaactggagagccagcagaacaatctg
agcgaacggtacgaggaggagaccggaccgagcgtgccagtgcgcggtgccagcgtcgca
ctcctcacggatcaaaccaagattctcaacatcgaagggggggagagcgccttcgaacag
gaggcggagcgcgacggctccaagctggagccgtggctcgtcaaggagatggacgcgtgc
atcaccaacatgtggctgcacagggacgaggacgcatccacgcagctgctgcacctgctg
atcagcgagcgcgtcagcgtcgactacaggcacagcgagaagaccgccacgccgctgatg
gtggccgccggccgcggcctcattgacatcgtggagctgctgctccggatgggggccgac
gtcaacttgaaggactccaacggcatgaacactttcgactgggcgaagaaattccatgaa
tcggacgtggtggagctcctggaatcgtctgcggcttcggtaggcgagcccgggcctgac
cagagcaagctggcgaacgccagcaccgggcttagccccgagtgccgtgagctgctcggc
gtctaccaccacaccttggacgatgacgacgacaaggtggacctcgatctcatcctgcac
ctcctcaaccagatctgccagagctccagcgatggagctgtgctgatttttctgccgggc
tacgatgagatcatcacgctgcgggacctcattctctgggacgacaaaagatttgcgggg
cagagccacaagtaccacgtgttcaccctccactccaacatgcagacgtgtgaccagagg
agagttctcaggagcgtgccgccgggaacccgcaaaattgcggcgaacctgctgctgcgg
ctgcggcagaagtggcgcgcgctgttcgcgcgccgcatgcgggagccgtcgcgcgccccg
tcgcaggcggacgaggcgacggtgagcgccgtcgtcgcggcgctggcccgcgaggacgag
gccctcggcctgcggcggcccgccggcatcggccggcggccgacgatgccgatcgctccc
gcggcgaggttttcgcccccggcggcggccgcggcggcggcttccctccgtctctccgcg
agcgagcgccgcttcgtcgcgaagagcggcaacgtgcgcagcctggagttgtcgcagcag
agggccgtctggccgacgaaactgaacggagcgttttcccgttcgtgcgccgtcgtccac
ctcgtcttctccgtgcggggctccggacgcttccagggctacgcacggacggtgtcggag
atcggcaaggagcggtcggagaccgggggctcccccgcgctgggcggagccgtttcgggt
gctgcggctgtacctggggcagaatccccttccggcaggtgcagcaccctgctcaacccg
tggtgtaacaacaacaacaacaagagggtgcaggtgagccgtgacgggcaggagctcgag
actcgggttggagaacagctgctcaaattgtgggacagatggccctgtgtcgccggtgat
ggtggtggcggcggcggcgatggcggcggtgtcgtgggtgcctctggcaccgctggcggc
gccgacgacgacacggcggagctaattggaagcagagcaacacgcaccccggcggcggat
gggaccccccctctcctcgagggctgtgcaaaggccgcagcaagtcactcccctctgcag
atgccgagcgtggagggggaggaggaggcggaggcgggttag
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