Paenibacillus mucilaginosus KNP414: KNP414_07598
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Entry
KNP414_07598 CDS
T01550
Symbol
mfd
Name
(GenBank) Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pms
Paenibacillus mucilaginosus KNP414
Pathway
pms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KNP414_07598 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pms03400
]
KNP414_07598 (mfd)
Enzymes [BR:
pms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KNP414_07598 (mfd)
DNA repair and recombination proteins [BR:
pms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KNP414_07598 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEI46088
UniProt:
F8FCJ7
LinkDB
All DBs
Position
complement(8293553..8297077)
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AA seq
1174 aa
AA seq
DB search
MQALIQAFSADNDFKSIVSGIRSGMREQLIAGLTGSSRQVMLASLFEELQQPLFVVTHNM
FAAQKMFEDLAELLPPEKVLLFPAQELLAAEAAIASPEMLAQRIDALARLAAGFRGLVVV
PYAGMRRLLPDQASIAAAQMTVSVGETLELDQLVVRLVELGYERVERVERKGEMSVRGGI
LDLFPLTSPHPFRIELFDVEVDSIRSFDASDQRSIDKVQTLLIPPCREIVVDRKRLQSAA
QQVHELLQEQIGKMTDRSAKDKLLEGIGHEIELLREGHSFQGMFKYVSLLFPDRQTLLDY
MPGDTILLVDEPARLLETAKQLEKDEAEWMTNSLQEGKSLPSLVLSKPYETLLHRKPYPT
LYMSLFLRQVPQTTPQNIVNFMCRVMQSFHGQMNLLKSEMERWKKAGAHVIMLASGADRV
ERMKRVLADYDIEAPQIESGSLQTGFELPGIHLVVITEGEMFTQKQRKARKVDKKIENAE
RIKNYQELKVGDYVVHVNHGIGKFVGIGTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDQV
QKYVGAEEGKEPKIYKLGGTDWNRVKSKARASVQDIADDLIKLYAERQATVGYAFNGDSN
YQQEFEGMFPYEETTDQLRAIEEIKKDMEKPRPMDRLLCGDVGYGKTEVAIRAAFKAAID
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSKKEQTDTMKGVKAGTVDVVI
GTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMAEQ
ITALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLDIQ
LDAYIPGDYIYDSVQKIEIYKKVAGIQTLEEAAELHDELVDRFGDLPEAVHNLLLAARLK
VYGAQYAIETISQKGLDYELKIHPDQNGNLDGQKLFELSAEFENRVKLIGGPQIIVELKG
KGLTPEQSIETLERFLVQYKRALKSKGELQDVAK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggctttgattcaggctttctccgcggataacgatttcaagagcatcgtgtccggc
attcgatcggggatgagagagcagttgattgccggtttgaccggctcatcgcggcaggtg
atgctggcttcgctttttgaggagctgcagcagcctttatttgtcgtgacgcataacatg
tttgccgcacagaagatgttcgaggatctggcggagctgcttccgccggagaaggtactg
ctgttcccggcgcaggagctgctggcggccgaagcggccatcgccagtcccgagatgctc
gcccaacggatcgatgcgctggcccggctggcggccggtttccgcggcctggtcgtcgtg
ccctacgcgggcatgcgccggctgctgccggatcaggcatccatcgccgccgcacagatg
accgtaagcgtaggggagaccctggagcttgatcagctggtggtccgcctggtggagctg
ggctatgaacgggtggagcgcgtggagcgcaaaggggagatgagcgtacggggcgggatt
ctcgatctgttcccgctgacctccccgcatccgttccggatcgagctcttcgatgtggaa
gtcgactcgatccgttcgtttgacgcgagcgatcagcggtcgatcgataaggtgcagacc
ttgttgattcctccgtgccgcgagatcgtagtggaccgcaagcggttacaatccgctgca
cagcaggtgcatgagctgctgcaggagcagatcggcaagatgaccgaccgcagtgccaaa
gataagctgcttgaaggcatcggccatgagatcgaactgctgcgggaagggcactcgttc
cagggcatgttcaagtatgtatcgcttctgttcccggaccggcagacgctgctggattac
atgccgggggatacgatcctgctcgtagatgaaccggcccgtctgctggagacggccaag
cagctggagaaggacgaagcggagtggatgaccaattcgctgcaggagggcaagagcctg
ccgtccctcgttctgtcgaagccgtacgagaccctgctgcaccgcaaaccgtatccgacg
ctgtatatgtcgctcttcctgcggcaggtgccgcagacgacgccgcagaacatcgtcaac
ttcatgtgccgggtcatgcagagcttccacggccagatgaacctgctcaagagcgagatg
gagcggtggaagaaggcaggggcccatgtcatcatgctggccagcggcgcggatcgcgtg
gagcggatgaagcgggtgctggcggactacgatatcgaggcgccgcagatcgagagcggc
tcacttcagaccggcttcgagctgccgggcattcatctggtcgtcatcaccgaaggcgag
atgttcacccagaagcagcgcaaggcgcgcaaggtggacaagaagatcgagaacgccgaa
cggatcaagaactaccaggagctgaaggtcggcgactatgtcgttcacgtcaaccacggg
atcgggaagttcgtcggcatcgggacacttgaggtaggcggcattcataaagattatctt
cacatcatgtacgccggcggcgacaagctgtcggtgccgatcgatcagatcgatcaggtt
cagaagtacgtaggcgcggaagaaggcaaggagcccaagatctacaagctgggcggcaca
gactggaaccgcgtcaaaagcaaagcgagagcttccgttcaggacattgccgacgacctc
atcaagctctatgcggagcggcaggcgacggtcgggtatgctttcaacggcgacagcaac
taccagcaggagttcgaaggcatgttcccttacgaggaaacaacggaccagctgcgcgcc
attgaagagatcaagaaggatatggagaagccgcgtccgatggatcgtctgctctgcggc
gacgtaggctacgggaagacggaagtggccatccgcgccgccttcaaggccgcgatcgac
gggaagcaggttgcggtgctcgtgccgacaaccatcctggcgcagcagcactacgagacg
ttccgcgagcgcttctccggctatccgttcaatattcaggtgctgagccgcttccgttcc
aagaaggaacagacggatacgatgaagggcgttaaggccggcacggtcgacgtggttatc
ggtactcaccggctgctgtccaaggacgtgcagttcaaggatttgggactgctgatcgtc
gatgaagagcagcgcttcggggtatcccataaagagaagctgaagcgcctgaagacgaac
gtggacgtgctgacgctgacggctacgccgatcccgcggacgctgcatatgtcgatgctc
ggtgtgcgcgacctctccgtcattgagacaccgcctgagaaccgcttcccggttcagacg
tatgtcgtggagtacagcacgaatctcgtgcgcgaagcgatcgagcgggagctggcccgg
gaggggcaggtgtactacctgtacaaccgggtgcagggcattacccagatggccgagcag
atcacggcgctggtgccggaagccagagtgacggtggcccatggccagatgtccgagcag
gagctcgagaagacgattctcgacttcctcgacggggagtacgatgtgttggtgtcgacc
agcattatcgaaaccggcgtggacattccgaacgtgaacacgctggtcgtccatgatgcc
gacaagatggggctgtcccagctttatcagctgagaggacgggtcggacggtccaaccgg
atcgcctacgcttactttacgtatcagcgggataaggtgctcaccgaggtggccgagaag
cgtctgcaggccatcaaggagtttacagaacttggatcagggtttaaaattgccatgaga
gacttgtccatccgcggggcgggcaacctgcttggggctgagcagagcggctttattgcc
tccgtcggattcgacctgtactcccagatgcttggtgaagagatcagcaagcgcaagaag
gagatgggcggcgaggccgtgcaggagaccaaggcctggtcgacccagctggacatccag
cttgacgcttatatcccgggcgattacatctatgacagcgtgcagaagatcgagatttac
aagaaggtggcgggcatccagacgctcgaagaggcggcggagctgcacgacgagcttgtc
gaccggttcggcgacctgccggaagcggtgcataacctgctgcttgcggccaggctgaag
gtatacggagcacagtatgcaatcgagaccatttcgcagaaggggctggattacgagctg
aagatccatcccgatcagaacggcaatctcgacggacagaagctgttcgaattgtcggct
gagttcgagaaccgggtgaagctgatcggcggtccgcaaatcatcgttgaactgaagggc
aagggtttgaccccggaacaatccatcgaaaccctcgagaggttcctggtacagtacaag
cgtgcgctcaaatcgaagggagaactgcaagatgttgcaaaataa
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