Prochlorococcus marinus MIT 9313: PMT_0066
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Entry
PMT_0066 CDS
T00143
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmt
Prochlorococcus marinus MIT 9313
Pathway
pmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMT_0066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmt03019
]
PMT_0066
Messenger RNA biogenesis [BR:
pmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMT_0066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Anti-Pycsar_Apyc1
RNase_J_C
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
CAE20241
UniProt:
Q7V989
LinkDB
All DBs
Position
67429..69432
Genome browser
AA seq
667 aa
AA seq
DB search
MTSSSTISRSTSSRDGKAKEPCLRVIPLGGLHEIGKNTCVFEYGDDIMMVDAGLAFPSDG
MHGVNVVMPDTSYLRENQKRIRGMIVTHGHEDHIGGIPHHLKHFNIPVIYGPRLAMSMLQ
GKMEEAGVTDRTTIQTVSPRDVVKVGQHFSVEFIRNTHSMADSFSLAITTPVGSVIFTGD
FKFDHTPVDGENFDMARLAHHGEQGVLCLFSDSTNAEVPGFCPPERSVFPALDRHISQAD
GRVIITTFASSIHRVSMILELALKNGRKVGLLGRSMLNVIAKARELGYMRAPDDLFVPIK
QIRDMPDRETLLLMTGSQGEPLAALSRISRGEHQHVQVKNSDTIIFSASPIPGNTISVVN
TIDRLMMLGAKVVYGKGEGIHVSGHGFQEDHKLMLALTKPKFFVPVHGEHRMLICHSKTA
QSMGVASENILILDNGDVVQLSADSISKGDSVKAGIELLDASRNGIVDARVLKERQQLAE
DGVVTVLAAISTDGVMVAPPRVNLRGVVTAADPRKMSIWTEREISWVLENRWKQFSRQTD
GKTPEVDWMGLQREVEVGLGRRMRRELQVEPLLLCLVQPAPGGTPAYKGMADAEPEDRSV
TRNRGDRDLASNGRRTPAAAPVKVAAAVSATSTTKKVADQANVKTQSEPESAEVPSGRTR
RRRSAAA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctagttccaccatttccagatccacctcttctagagacggtaaagccaaagag
ccctgcttacgagtgattccccttggtgggctccatgagattggcaagaacacctgcgtg
ttcgagtacggcgacgacatcatgatggtggatgctggcctggcatttcccagtgatgga
atgcatggcgtcaatgtggtgatgccagacaccagttatctacgcgagaaccaaaagcgc
atccgcggcatgatcgtgacccatggtcatgaagatcatattggtgggattcctcatcac
ctcaagcacttcaatattccagtgatctatggcccgcgtctggccatgtcaatgctccag
ggaaagatggaagaggctggtgttacagaccgcaccacgatccagaccgtgagtccacgg
gatgtagtcaaggttggacaacacttttcggtggaatttatccgcaatacccactcgatg
gcagatagcttttcgcttgccatcaccactcctgttggctcggtgatcttcacaggagac
ttcaagtttgaccatactcctgtggatggtgaaaattttgatatggctcgccttgcacat
cacggcgagcaaggtgttttgtgtttgttcagtgattcaaccaatgctgaggtgcctggc
ttctgtccacctgagcgatcggtatttcctgctttagatcgccatatttctcaagctgat
ggccgagtgattatcacaacttttgcgagctctattcaccgcgtttcaatgattttggag
ctggctttaaagaatggacgaaaagttggtttgcttgggcgatcgatgctcaatgtgatc
gctaaggcgcgtgaacttggctatatgcgtgctcctgatgatctgttcgtaccgatcaaa
cagattcgtgatatgcctgatcgtgagactctgttgttgatgacagggagtcagggcgag
ccgttggctgctttaagtcgcatctcacgcggtgagcatcaacatgtgcaggtcaagaac
tctgacacgattatcttttcggcgagtccgattccgggtaatacgatctcagttgttaat
accatcgaccgcttgatgatgcttggagccaaggtggtctatggcaagggagagggtatc
catgtttctgggcatggcttccaggaggatcacaagttgatgctggctttaacaaagcca
aagttttttgtgcctgtacatggtgagcatcgcatgcttatttgccacagtaagactgcg
cagtcgatgggcgtagcaagcgaaaatattttgattcttgataatggtgatgttgttcaa
ctttcagctgattcgattagtaaaggagactcagtaaaagcaggaattgaacttcttgat
gcttctcgcaatggcattgttgatgctcgtgttttgaaagagcgccagcaacttgctgaa
gatggtgttgtcactgtgttggctgcaatcagtaccgatggagtgatggttgcaccgcca
agagtgaacttgcgaggtgttgtgaccgctgctgacccccgcaagatgtcgatttggact
gaacgggaaataagctgggtgttggaaaaccgctggaagcagttttctcgtcaaacagat
ggcaaaactcctgaagtcgattggatgggtttgcagcgagaagtggaagtgggtttgggt
cgtcgaatgcgtcgtgagttgcaagttgagcccttgcttctgtgcctagttcagcctgca
ccaggcggaacacctgcttataaaggtatggctgatgctgaacctgaagatcgatcagtg
acccgcaatcgtggtgatcgtgatctggctagtaacggacgccgaactccagctgcggct
cctgtcaaggttgcggcagctgtgtcagcaacgtcgactacgaagaaggttgcagatcaa
gccaatgtcaagactcaatctgaacctgagtcagcagaggtgccttccggtcgtacacgc
cgtcgccgctcagcggcggcttaa
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